genome.fa.s68.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold68
Parameters: 2 7 7 80 10 50 1000
Length:  494511

Tables:   1   2   3   

This is table  3  of  3  ( 356 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318591--318643	17	3.2	16	80	17	56	0	7	5	86	0.69
318586--318643	13	4.6	12	78	19	55	0	8	5	86	0.71
318596--318663	30	2.3	29	85	10	84	2	5	7	83	0.88
330801--331394	79	7.6	76	78	6	510	32	13	25	28	1.93
330809--331394	157	3.7	155	81	6	603	33	13	25	28	1.94
333734--333787	20	2.7	20	94	0	90	44	12	14	27	1.82
347136--347251	51	2.3	51	89	0	178	46	11	15	26	1.79
350738--350783	23	1.9	25	86	8	69	69	4	8	17	1.31
353198--353818	163	3.8	161	77	6	592	39	12	9	37	1.77
357467--357612	20	6.8	20	70	18	105	39	12	14	34	1.83
357637--357662	13	2.0	13	100	0	52	30	15	15	38	1.88
358219--358259	12	3.3	12	83	16	57	0	17	0	82	0.66
358221--358259	14	2.8	14	92	0	60	0	17	0	82	0.68
358767--359363	165	3.6	163	82	5	688	50	7	11	30	1.66
360346--360570	42	5.4	42	75	6	168	36	17	28	17	1.93
360363--360576	84	2.6	83	78	3	214	35	18	29	16	1.93
360839--360878	19	2.2	19	95	4	73	17	10	0	72	1.11
364973--364997	13	1.9	13	100	0	50	32	16	16	36	1.90
364954--365019	33	2.0	32	91	2	105	33	15	15	36	1.88
365064--365141	21	3.8	21	72	16	65	39	14	14	32	1.85
373118--373197	22	3.8	21	78	9	83	40	15	13	31	1.86
377763--377791	6	5.0	6	91	8	51	0	31	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384526--384551	13	2.0	13	100	0	52	38	15	15	30	1.88
384606--384644	20	1.9	21	94	5	71	41	17	10	30	1.83
385457--385507	24	2.2	24	80	16	63	1	23	1	72	1.05
386587--386613	13	2.1	13	100	0	54	40	14	14	29	1.86
388913--388959	22	2.2	23	85	14	66	46	0	21	31	1.51
395261--395325	33	2.0	33	84	6	87	32	15	15	36	1.89
395356--395405	20	2.5	20	90	3	75	34	18	14	34	1.90
397715--397761	22	2.2	23	85	14	66	46	0	21	31	1.51
404036--404066	13	2.4	13	94	0	53	35	12	16	35	1.87
404016--404080	33	2.0	33	87	6	96	33	18	13	33	1.90
404111--404160	18	2.6	20	87	12	86	30	16	16	38	1.90
406483--406529	22	2.2	23	85	14	66	46	0	21	31	1.51
406652--406677	13	2.0	13	100	0	52	38	15	15	30	1.88
412811--412836	13	2.0	13	100	0	52	38	15	15	30	1.88
412791--412855	33	2.0	32	88	11	96	35	18	12	33	1.88
412886--412940	20	2.8	20	91	2	85	36	18	12	32	1.88
412926--412952	13	2.1	13	100	0	54	40	14	14	29	1.86
413519--414081	163	3.5	159	80	7	580	52	7	10	30	1.63
414981--415008	14	2.0	14	100	0	56	28	35	7	28	1.84
415693--416092	155	2.6	155	86	2	543	28	23	15	33	1.95
415655--416114	52	8.9	52	72	7	283	27	24	15	32	1.95
432693--432742	20	2.5	20	83	0	55	32	16	10	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437663--437741	40	2.0	41	87	2	115	37	8	11	41	1.72
437757--437794	20	1.9	20	94	0	67	34	13	10	42	1.78
441289--441409	31	3.9	31	78	8	138	18	25	28	28	1.98
441388--441458	31	2.3	31	82	4	90	19	25	25	29	1.99
441526--441630	34	3.1	33	79	6	111	34	16	25	23	1.95
441795--441875	29	2.8	27	78	12	90	33	16	25	24	1.96
445288--445342	20	2.8	20	85	0	74	40	12	12	34	1.82
446024--446133	49	2.3	48	81	6	118	33	19	25	21	1.97
446193--446978	28	27.1	28	80	8	751	24	18	29	28	1.98
446193--446978	57	13.5	57	81	6	803	24	18	29	28	1.98
446213--446978	89	8.8	86	82	5	780	24	18	29	28	1.98
448190--448227	20	1.9	20	84	10	51	2	10	5	81	0.94
460418--460467	23	2.1	23	81	3	55	34	12	10	44	1.75
464404--464475	28	2.6	28	88	0	99	23	19	34	22	1.96
464436--464614	80	2.2	81	84	4	245	30	13	27	29	1.94
464453--464611	82	2.0	80	87	5	230	31	12	27	28	1.93
467033--467058	13	2.0	13	100	0	52	38	15	15	30	1.88
467012--467078	33	2.0	33	88	0	98	43	16	14	25	1.86
467098--467165	19	3.9	18	76	23	83	38	14	11	35	1.83
467120--467144	13	1.9	13	100	0	50	32	16	16	36	1.90
467101--467163	32	2.0	32	96	0	117	36	15	12	34	1.86
467682--467881	79	2.6	79	81	1	215	29	17	28	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467833--467904	28	2.6	27	89	8	101	25	19	33	22	1.97
467865--468043	80	2.2	82	84	2	254	30	13	26	29	1.94
467882--468040	82	2.0	80	88	2	237	31	12	26	29	1.93
467977--468095	51	2.3	53	84	7	145	34	10	22	31	1.89
470442--470496	20	2.8	20	82	0	74	45	16	14	23	1.84
471114--471896	55	13.9	55	88	5	1083	22	19	29	28	1.98
471541--471623	27	3.0	27	60	16	62	20	19	31	28	1.97
474349--474473	52	2.4	52	95	0	223	28	17	18	36	1.94
474349--474493	52	2.8	51	89	4	211	29	17	18	34	1.94
474482--474506	13	1.9	13	100	0	50	36	16	16	32	1.90
474550--474604	20	2.8	20	85	0	74	45	12	10	30	1.77
474806--474865	27	2.2	27	87	0	84	28	15	38	18	1.91
474833--475344	34	14.8	34	86	6	649	33	11	33	21	1.89
474772--475378	105	5.9	103	86	7	710	33	11	33	21	1.90
475219--475503	94	3.0	94	80	10	265	30	14	31	23	1.94
475356--475500	31	4.7	31	86	7	197	26	18	28	25	1.98
476663--477192	49	10.7	52	85	8	485	32	17	25	25	1.97
476726--477198	49	9.7	49	89	3	726	30	18	25	25	1.98
477191--477269	32	2.5	31	90	8	124	17	15	37	29	1.90
477251--478173	34	27.3	35	85	9	1040	32	12	34	20	1.90
477271--478205	105	9.3	102	84	8	1041	33	12	33	20	1.90
477474--477533	27	2.2	27	87	0	84	28	15	38	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477601--477659	27	2.1	28	87	3	84	30	15	33	20	1.93
478009--478329	34	10.0	32	81	7	172	31	14	31	22	1.94
478138--478332	94	2.1	94	83	5	243	31	16	27	24	1.96
478185--478329	31	4.7	31	83	7	179	26	18	28	26	1.98
479698--479723	13	2.0	13	100	0	52	38	15	15	30	1.88
479677--479743	33	2.0	33	88	0	98	43	16	14	25	1.86
479763--479830	19	3.9	18	76	23	83	38	14	11	35	1.83
479785--479809	13	1.9	13	100	0	50	32	16	16	36	1.90
479766--479828	32	2.0	32	96	0	117	36	15	12	34	1.86
484894--485043	30	5.0	31	81	11	161	22	30	15	32	1.94
484994--485460	33	14.8	33	71	13	231	22	29	11	36	1.89
485021--485201	90	2.0	92	81	4	215	21	29	9	39	1.85
485085--485134	24	2.1	24	84	0	64	20	26	4	50	1.66
485052--485165	57	2.0	57	86	3	158	22	28	7	42	1.80
485121--485460	68	5.3	66	73	14	241	23	30	12	34	1.91
485281--485365	27	3.1	27	76	3	89	22	30	15	31	1.95
485280--485366	28	3.1	27	73	4	84	21	29	14	33	1.94
485454--485619	33	5.2	32	77	5	158	29	33	18	19	1.95
485704--486258	52	10.5	52	72	11	261	24	24	15	35	1.94
485790--486285	270	1.8	270	84	0	668	24	24	14	36	1.93
486054--486271	104	2.1	104	85	0	294	23	24	15	36	1.93
486823--486878	20	2.7	21	86	10	80	39	14	16	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488533--489455	462	2.0	461	98	0	1765	31	18	14	35	1.91
492869--492893	13	1.9	13	100	0	50	36	16	16	32	1.90
492925--492987	19	3.7	18	76	24	73	36	17	12	33	1.88
492917--493002	32	2.7	32	94	0	154	36	17	13	32	1.89
492944--493000	13	3.9	13	76	24	60	33	17	14	35	1.90
493040--493094	21	2.6	21	97	0	101	40	16	9	34	1.80

Tables:   1   2   3

The End!