genome.fa.s765.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold765
Parameters: 2 7 7 80 10 50 1000
Length:  464481

Tables:   1   2   3   

This is table  3  of  3  ( 313 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327970--328047	21	3.7	21	87	3	113	37	12	15	34	1.86
328083--328137	19	2.9	19	97	0	101	34	10	14	40	1.81
328177--328202	13	2.0	13	100	0	52	30	15	15	38	1.88
328157--328223	33	2.0	33	88	0	98	25	14	16	43	1.86
330675--330750	27	2.8	28	86	6	102	25	32	19	22	1.97
330733--330955	52	4.3	52	84	7	224	28	26	12	32	1.93
332929--332965	2	18.5	2	88	0	56	43	0	5	51	1.24
338970--339049	36	2.3	35	81	12	85	71	10	13	5	1.29
339305--339330	13	2.0	13	100	0	52	76	15	0	7	0.99
345507--345548	21	2.0	21	86	9	59	50	7	9	33	1.62
349563--349587	11	2.3	11	100	0	50	8	0	8	84	0.79
351021--351302	142	2.0	142	85	2	388	36	11	11	40	1.77
353283--355162	629	3.0	630	98	0	3663	49	8	11	30	1.69
355676--355737	30	2.1	30	100	0	124	41	16	9	32	1.80
356273--356303	2	15.5	2	93	0	53	48	3	0	48	1.17
356359--356401	15	2.9	15	80	16	54	58	4	0	37	1.19
363164--363202	13	3.0	13	92	0	60	30	10	15	43	1.80
363311--363351	21	1.9	21	85	5	55	26	19	0	53	1.45
365598--365622	13	1.9	13	100	0	50	36	16	16	32	1.90
365607--365663	19	2.9	21	80	15	77	33	15	15	35	1.90
365606--365662	20	2.9	21	82	12	77	33	15	14	36	1.88
365709--365738	13	2.3	13	100	0	60	33	16	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365692--365760	33	2.1	32	86	10	95	28	14	20	36	1.92
366500--366556	13	3.9	13	76	24	60	35	14	17	33	1.90
366480--366577	32	3.0	32	96	1	178	34	12	17	35	1.87
366478--366575	19	5.8	18	71	28	90	33	12	17	36	1.87
366618--366642	13	1.9	13	100	0	50	32	16	16	36	1.90
366651--366727	33	2.4	33	95	2	138	31	19	22	27	1.98
370248--370289	17	2.5	17	76	3	50	57	19	2	21	1.52
373386--373416	2	15.5	2	93	0	53	45	0	3	51	1.17
375880--375920	18	2.4	17	84	8	55	24	4	2	68	1.22
378145--378180	8	4.2	8	86	13	54	36	0	0	63	0.94
378153--378203	18	3.0	16	83	13	50	33	0	0	66	0.92
378143--378205	13	4.9	14	75	19	57	33	0	0	66	0.92
380419--380459	15	2.9	14	85	7	55	68	2	2	26	1.15
380923--380981	21	2.8	21	79	5	57	32	22	5	40	1.75
383786--383830	21	2.1	22	88	8	67	55	4	17	22	1.60
385633--385663	15	2.1	15	93	0	53	48	16	22	12	1.80
387743--387768	13	2.0	13	100	0	52	30	15	15	38	1.88
390318--390343	13	2.0	13	100	0	52	38	15	15	30	1.88
390300--390363	32	2.0	33	87	3	94	40	17	14	28	1.88
396638--396711	35	2.1	34	82	7	87	54	2	6	36	1.41
396720--396782	25	2.5	24	87	5	81	61	4	7	25	1.43
396806--396844	20	2.0	20	89	0	60	46	0	5	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396818--396857	20	2.0	20	85	0	53	50	0	7	42	1.30
404514--404539	9	2.9	9	100	0	52	23	0	23	53	1.46
409087--409388	151	2.0	149	89	5	457	25	18	16	39	1.91
410209--410329	61	2.0	61	98	0	233	32	19	14	34	1.91
414090--414141	19	2.7	20	84	6	70	28	13	17	40	1.87
414090--414147	19	3.0	18	80	12	62	25	12	20	41	1.87
416187--416229	20	2.1	21	86	4	61	9	27	44	18	1.80
416670--416708	13	3.0	13	96	0	69	35	17	15	30	1.91
422895--422920	13	2.0	13	100	0	52	30	15	15	38	1.88
422875--422938	32	2.0	33	87	3	94	28	14	17	40	1.88
424646--424689	16	2.6	17	82	13	56	81	6	2	9	0.94
424799--424862	30	2.2	30	88	2	94	73	3	12	10	1.21
439277--440652	62	21.9	62	82	6	1432	27	24	18	29	1.98
439277--440657	566	2.4	566	92	1	2267	27	24	18	29	1.98
439287--440646	127	10.8	126	78	8	639	27	24	18	29	1.98
440617--440762	49	3.0	48	85	3	202	23	24	20	30	1.98
440773--440844	33	2.3	31	85	4	90	30	25	18	26	1.98
440773--440852	31	2.5	33	87	4	110	28	23	21	26	1.99
441594--441677	31	2.7	31	83	5	98	72	2	14	10	1.21
444841--444943	52	2.0	52	96	0	188	21	23	8	46	1.79
448269--448569	155	1.9	155	81	2	363	30	8	15	44	1.77
449570--449601	13	2.3	15	89	10	50	59	6	6	28	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451913--451966	22	2.5	23	85	11	62	46	3	7	42	1.49
452292--452350	31	2.0	30	83	6	75	50	11	3	33	1.56
455881--455950	36	2.0	34	83	5	86	47	0	4	48	1.21
455906--455957	26	2.0	25	92	3	86	44	0	1	53	1.11
463594--463682	23	3.7	25	76	18	75	75	1	8	14	1.10
463638--463681	8	5.8	8	86	7	56	84	0	4	11	0.77
463637--463681	15	2.9	15	87	12	65	84	0	4	11	0.76

Tables:   1   2   3

The End!