genome.fa.s85.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold85
Parameters: 2 7 7 80 10 50 1000
Length:  1350895

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 625 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143918--143955	18	2.1	18	95	0	67	21	21	18	39	1.93
144159--144223	31	2.1	31	91	0	103	6	18	30	44	1.74
144245--144284	21	1.9	21	89	0	62	17	17	12	52	1.74
144449--144568	22	5.4	21	86	5	123	61	1	1	35	1.16
144449--144568	11	10.7	11	72	2	96	61	1	1	35	1.16
144437--144568	44	2.9	46	84	9	175	61	2	1	34	1.18
144559--144602	17	2.5	17	78	14	54	61	0	2	36	1.09
147870--147911	18	2.3	19	84	12	52	66	0	2	30	1.04
148297--148321	3	8.3	3	100	0	50	36	32	0	32	1.58
149718--149775	17	3.6	16	75	17	57	43	0	1	55	1.10
150124--150186	16	4.2	15	76	11	58	73	1	3	22	1.07
151867--151918	25	2.1	25	81	0	59	44	0	0	55	0.99
151893--151934	22	1.9	22	85	9	59	40	0	0	59	0.97
152185--152223	18	2.2	18	85	0	51	71	0	0	28	0.86
152946--152994	22	2.2	23	85	3	64	53	2	32	12	1.50
154235--154277	15	2.8	16	82	13	54	32	0	9	58	1.30
155875--155931	13	3.9	13	74	24	51	33	14	19	33	1.91
155855--155952	32	3.0	32	95	1	169	33	12	18	35	1.88
155853--155950	19	5.8	18	69	28	81	32	12	18	36	1.88
155994--156018	13	1.9	13	100	0	50	32	16	16	36	1.90
156027--156151	52	2.4	52	95	2	225	33	18	18	29	1.95
309759--309787	13	2.2	13	100	0	58	27	13	17	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312335--312360	13	2.0	13	100	0	52	30	15	15	38	1.88
312314--312382	33	2.1	34	91	8	115	33	13	20	33	1.91
320353--320443	36	2.7	33	81	17	107	31	23	12	32	1.91
320904--321028	32	3.8	32	82	7	144	40	9	21	28	1.85
324773--324826	21	2.5	21	79	8	56	35	5	12	46	1.66
324917--325027	20	5.7	19	87	4	123	30	16	16	36	1.90
324917--325026	39	2.8	38	84	4	121	30	16	15	37	1.90
325077--325101	13	1.9	13	100	0	50	36	16	16	32	1.90
331453--331492	19	2.1	19	85	4	53	77	0	17	5	0.94
331766--331824	12	4.9	12	73	22	52	10	35	0	54	1.34
332077--332270	10	19.4	10	70	14	87	33	24	9	31	1.88
332066--332272	40	5.2	40	92	1	299	33	26	9	31	1.88
336227--336285	12	4.9	12	73	22	52	10	35	0	54	1.34
336538--336691	10	15.4	10	69	15	68	33	24	10	31	1.89
336527--336693	40	4.2	40	89	1	228	32	26	9	31	1.88
341333--341380	22	2.2	21	78	10	51	22	4	10	62	1.44
342545--342585	17	2.3	18	87	4	57	82	2	9	4	0.89
342791--342829	15	2.6	15	100	0	78	23	5	30	41	1.76
350745--350925	92	2.0	91	92	3	303	17	32	2	47	1.60
352530--352650	13	7.9	13	71	28	80	31	20	15	32	1.94
352543--352670	19	7.7	19	71	28	130	32	21	15	30	1.95
352529--352669	32	4.4	32	100	0	282	31	21	15	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352736--352762	13	2.1	13	100	0	54	48	7	14	29	1.71
353311--353368	31	1.9	31	89	3	91	34	22	10	32	1.88
361818--362519	89	7.9	89	85	1	877	28	27	14	28	1.95
361820--362498	357	1.9	355	86	2	977	29	28	14	28	1.95
362880--363027	42	3.5	42	76	6	131	20	22	16	41	1.90
363041--363206	42	4.0	41	78	7	156	18	34	15	30	1.92
364077--364132	21	2.6	22	94	5	105	37	10	25	26	1.88
364174--364310	53	2.6	53	91	1	220	27	16	18	37	1.92
364280--364350	20	3.5	20	77	11	74	29	12	16	40	1.86
364390--364430	21	2.0	21	85	9	57	39	9	12	39	1.76
364760--365018	42	6.2	42	75	4	200	16	27	16	38	1.91
364760--365018	84	3.1	82	80	8	292	16	27	16	38	1.91
364802--365878	42	25.9	42	68	11	211	17	29	16	36	1.92
366414--366439	13	2.0	13	100	0	52	30	15	15	38	1.88
369207--369251	22	2.0	22	100	0	90	40	4	13	42	1.64
380193--380244	16	3.4	16	84	7	56	88	0	3	7	0.62
380193--380244	1	52.0	1	76	0	50	88	0	3	7	0.62
381277--381405	37	3.5	37	97	2	244	26	16	13	43	1.85
381763--382335	29	20.1	29	83	4	675	32	26	17	23	1.96
381757--382371	85	7.2	84	84	4	652	32	27	17	23	1.96
381789--382428	57	11.3	54	78	10	289	33	26	17	22	1.96
382450--382585	49	3.0	43	77	12	155	25	24	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382445--382789	52	7.0	49	75	9	265	26	25	15	32	1.95
382490--382799	52	6.1	51	76	5	270	26	26	15	32	1.95
382487--382729	101	2.4	101	84	2	310	25	27	15	31	1.96
382507--382789	153	1.9	150	80	5	327	26	26	15	31	1.96
386252--386535	144	2.0	144	97	0	532	31	19	13	35	1.90
386309--386531	72	3.1	72	62	19	174	30	17	12	39	1.87
387202--390119	42	69.9	42	69	9	338	18	28	15	37	1.92
387191--387884	331	2.1	333	83	4	857	18	28	15	37	1.92
387768--387969	39	5.1	39	71	9	131	16	32	17	33	1.92
389003--389302	120	2.5	121	81	9	335	19	33	12	35	1.89
388699--390127	42	34.4	42	70	10	494	18	29	15	36	1.92
393938--393973	18	2.0	18	88	0	54	44	11	16	27	1.82
395773--395824	21	2.4	21	81	12	61	17	23	1	57	1.49
399304--399391	20	4.8	20	76	18	100	39	9	12	38	1.75
399307--399371	33	2.0	33	93	0	112	40	10	10	38	1.75
400988--401082	36	2.9	32	83	12	113	30	23	12	33	1.92
401562--401607	24	1.9	24	86	0	65	43	15	17	23	1.87
413844--413994	42	3.5	44	70	10	127	17	24	14	43	1.86
414100--414397	62	4.8	62	80	3	307	26	27	26	19	1.99
414096--414398	31	9.8	31	72	3	198	26	27	27	19	1.99
414401--414657	59	4.2	60	80	9	279	27	24	16	31	1.96
414401--414657	122	2.1	119	82	8	300	27	24	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414908--414933	13	2.0	13	100	0	52	46	7	15	30	1.74
418158--418183	13	2.0	13	100	0	52	30	15	15	38	1.88
418138--418201	19	3.6	19	72	25	68	26	12	17	43	1.84
418138--418201	33	2.0	33	93	3	112	26	12	17	43	1.84
418232--418305	20	3.7	20	82	8	78	29	17	13	39	1.88
426874--426924	20	2.6	20	90	3	77	25	13	17	43	1.86
428075--428138	6	10.7	6	100	0	128	32	0	0	67	0.91
429661--429715	19	2.8	20	72	5	58	36	12	16	34	1.87
429683--429746	33	2.0	32	87	3	92	39	15	14	31	1.87
429845--429925	22	3.7	22	71	19	71	38	8	8	44	1.66
429845--429927	21	3.9	21	70	14	62	38	8	8	44	1.65
429879--429952	21	3.4	21	66	20	53	44	10	2	41	1.53
429856--429952	44	2.2	44	94	3	169	42	10	5	42	1.61
430525--430653	43	3.0	43	86	6	190	26	23	2	48	1.63
440788--440842	19	2.8	19	81	10	67	36	16	14	32	1.89
447456--447496	19	2.2	19	86	4	57	17	4	2	75	1.08
449517--449542	13	2.0	13	100	0	52	38	15	15	30	1.88
449591--449646	19	2.8	20	79	12	71	35	12	14	37	1.84
451278--451333	19	2.9	19	86	2	76	33	17	17	30	1.94
451318--451344	13	2.1	13	100	0	54	40	14	14	29	1.86
451887--451932	22	2.1	21	92	4	74	30	28	2	39	1.69
455946--456000	20	2.7	21	86	11	78	36	18	10	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456029--456081	19	2.7	20	91	2	81	35	18	15	30	1.92
456092--456119	13	2.2	13	100	0	56	42	14	14	28	1.84
461444--461515	28	2.6	28	86	0	90	23	19	34	22	1.96
461503--461890	52	7.4	51	69	16	213	32	11	26	29	1.91
461386--461838	211	2.2	210	91	2	732	33	12	26	27	1.93
461738--461888	52	2.9	51	90	4	221	34	10	25	29	1.90
464253--464278	13	2.0	13	100	0	52	38	15	15	30	1.88
464422--464463	21	2.0	21	90	0	66	35	14	14	35	1.86
465785--465841	24	2.4	25	80	14	66	70	8	0	21	1.14
465868--465903	16	2.2	17	90	5	56	58	5	0	36	1.22

Tables:   1   2   3   4   5   6