genome.fa.s85.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold85
Parameters: 2 7 7 80 10 50 1000
Length:  1350895

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 625 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590645--590809	50	3.3	48	83	5	188	31	11	26	30	1.91
593120--593193	20	3.7	20	83	3	96	41	13	16	28	1.86
593799--594010	41	5.3	40	75	16	145	42	12	24	20	1.86
593798--594069	43	6.6	41	71	17	127	44	11	24	19	1.84
593904--594095	42	4.5	42	77	13	146	41	13	23	21	1.89
594154--594239	27	3.1	27	62	15	68	29	19	23	27	1.98
594154--594240	28	3.1	28	64	14	72	29	19	22	27	1.98
594065--594612	55	9.5	59	83	9	622	28	20	25	26	1.99
594066--594612	116	4.8	116	85	6	665	28	20	25	26	1.99
594539--594821	94	2.9	94	92	4	451	26	18	30	24	1.98
595806--595859	10	5.7	9	80	20	65	1	1	11	85	0.76
595794--595852	11	5.5	11	83	4	68	1	3	10	84	0.80
595800--595852	20	2.5	21	87	9	81	1	1	11	84	0.77
595794--595852	10	5.7	10	84	6	73	1	3	10	84	0.80
606151--606183	4	8.2	4	93	0	57	72	3	0	24	0.98
607715--607743	14	2.1	14	100	0	58	37	0	20	41	1.53
608257--608558	130	2.3	128	80	6	324	33	12	26	27	1.92
608517--608592	28	2.7	29	89	4	120	25	14	32	27	1.94
608467--608671	107	1.9	107	82	1	259	29	13	28	28	1.94
608546--608874	79	4.2	79	83	4	373	31	14	26	27	1.95
608811--608937	51	2.6	47	81	12	146	34	12	26	25	1.92
611169--611199	13	2.4	13	94	0	53	41	16	16	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611150--611216	33	2.0	33	94	0	116	40	16	17	25	1.90
611241--611311	20	3.5	20	94	0	124	42	12	18	26	1.86
611613--612166	30	17.9	30	81	8	546	24	28	15	31	1.95
611613--612166	156	3.6	155	83	7	664	24	28	15	31	1.95
611613--612192	125	4.7	123	81	7	538	24	28	15	31	1.95
612141--612390	33	7.8	33	76	9	239	19	30	12	37	1.89
612387--613228	191	4.5	189	82	7	830	25	25	17	32	1.97
612439--613139	140	5.0	140	84	5	816	25	24	17	31	1.97
612381--613132	331	2.3	318	85	5	952	25	24	17	31	1.97
612387--613132	91	8.0	95	77	12	571	25	24	17	31	1.97
612911--613082	86	2.0	87	87	1	247	26	25	19	29	1.98
613005--613228	99	2.3	97	79	4	227	24	25	17	33	1.96
612381--613228	331	2.6	325	83	6	946	25	25	17	31	1.97
616943--616996	20	2.7	20	85	2	63	40	12	16	29	1.86
617027--617111	20	4.7	18	74	25	81	44	15	11	28	1.81
617045--617070	13	2.0	13	100	0	52	38	15	15	30	1.88
617027--617091	34	2.0	33	93	6	114	44	15	12	27	1.82
617058--617112	21	2.6	22	91	8	89	45	14	10	29	1.79
619240--619289	21	2.3	21	80	10	57	56	4	18	22	1.58
621087--621117	15	2.1	15	93	0	53	48	16	22	12	1.80
623198--623222	13	1.9	13	100	0	50	32	20	16	32	1.94
623334--623379	21	2.2	20	81	11	58	32	19	4	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961332--961390	9	6.9	9	71	11	52	13	44	0	42	1.44
961328--961369	12	3.6	12	84	15	61	11	45	0	42	1.41
961314--961418	42	2.5	42	87	6	142	12	44	0	42	1.42
961328--961395	12	6.1	12	75	18	51	14	42	0	42	1.46
962132--962174	19	2.2	19	83	4	50	0	11	9	79	0.95
966971--967057	12	8.0	11	79	15	76	37	1	49	11	1.47
966991--967022	9	3.6	9	91	0	55	43	0	43	12	1.42
966961--967040	42	1.9	42	94	0	142	43	0	45	11	1.39
966971--967060	22	4.2	22	77	11	87	38	1	48	11	1.46
972769--972818	18	2.7	20	79	11	54	10	44	2	44	1.49
972808--972882	12	5.9	12	71	27	57	10	48	1	40	1.46
972769--972891	40	2.9	41	80	8	131	9	44	1	43	1.46
972831--972867	18	2.1	17	90	5	56	13	43	0	43	1.44
977890--977950	9	7.1	9	77	7	65	11	45	0	42	1.40
977861--977980	42	2.9	42	91	0	186	10	45	0	43	1.43
977895--977971	12	6.9	12	77	19	71	11	48	0	40	1.40
985217--985323	12	10.0	11	72	23	70	40	0	47	12	1.41
985237--985297	9	7.1	9	78	10	74	44	0	42	13	1.43
985207--985329	42	2.9	41	86	3	156	43	0	45	10	1.38
991120--991191	12	6.5	11	78	16	62	41	0	44	13	1.44
991140--991200	9	7.1	9	76	10	65	45	0	40	13	1.43
991110--991241	42	3.1	42	90	2	185	46	0	42	11	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991167--991231	18	3.3	18	67	29	51	44	0	44	10	1.39
991641--991678	20	1.9	20	100	0	76	28	21	28	21	1.98
991858--991917	18	3.2	18	73	13	66	21	25	5	48	1.70
991855--991918	21	3.2	20	70	20	62	21	26	4	46	1.71
996770--996867	49	2.0	49	100	0	196	26	26	6	40	1.79
997789--997874	28	3.1	28	77	1	84	59	5	20	13	1.55
999222--999345	39	3.2	39	71	14	121	29	7	20	42	1.79
1001043--1001170	51	2.5	51	89	0	211	25	7	20	46	1.75
1001799--1002508	317	2.2	312	78	7	702	37	12	18	31	1.88
1002271--1002779	159	3.2	154	75	13	396	36	11	18	32	1.87
1002462--1002755	152	1.9	151	80	6	344	35	11	18	34	1.87
1002912--1002938	13	2.1	13	100	0	54	44	0	37	18	1.50
1004403--1004980	307	1.9	304	80	6	675	39	11	18	30	1.87
1004706--1005065	156	2.3	157	82	6	426	38	11	17	33	1.85
1005074--1005499	155	2.7	151	79	8	387	36	12	19	32	1.89
1007298--1007415	12	10.9	11	80	16	108	39	0	46	13	1.43
1007318--1007420	9	12.1	9	72	12	92	41	0	44	13	1.44
1007297--1007448	42	3.6	42	95	0	259	40	1	46	12	1.50
1007300--1007429	12	11.9	12	75	16	67	41	0	44	13	1.44
1013233--1013350	42	2.8	42	93	0	200	9	45	1	43	1.46
1013265--1013340	12	6.9	11	75	15	52	9	48	2	39	1.49
1013247--1013317	18	3.6	18	69	20	52	9	43	2	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1019186--1019522	158	2.1	160	79	6	355	39	11	17	31	1.86
1028633--1028751	42	2.8	42	92	0	193	8	46	2	42	1.47
1028666--1028741	12	6.9	11	75	15	52	9	48	2	39	1.49
1028657--1028742	24	3.8	24	72	17	85	10	45	2	41	1.51
1028648--1028718	18	3.6	18	69	20	52	9	43	2	43	1.52
1030371--1031148	158	4.9	156	76	7	493	36	12	17	32	1.88
1036947--1037022	12	6.9	11	75	15	52	39	2	48	9	1.49
1036946--1037031	24	3.8	24	72	17	85	41	2	45	10	1.51
1036937--1037055	42	2.8	42	92	0	193	42	2	46	8	1.47
1047732--1048237	154	3.3	151	81	4	539	40	21	15	22	1.91
1049654--1049700	12	3.8	12	76	15	51	2	21	2	74	1.03
1050342--1050746	165	2.4	165	81	4	442	48	7	11	33	1.67
1052263--1053558	657	2.0	658	97	0	2443	27	14	17	40	1.88
1053855--1053889	12	2.9	12	84	16	54	40	0	48	11	1.39
1053855--1053946	24	4.2	23	75	18	88	44	0	42	13	1.43
1053876--1053936	9	7.1	9	77	17	67	45	0	40	13	1.43
1053846--1053965	42	2.9	42	88	0	177	45	0	44	10	1.39
1060751--1060834	29	2.9	29	87	1	107	22	16	27	33	1.96
1060944--1061011	30	2.3	30	82	10	77	25	16	29	29	1.96
1060987--1061174	31	5.8	32	72	9	130	22	20	25	30	1.98
1060984--1061172	96	1.9	99	82	5	242	21	20	26	31	1.98
1061021--1061212	31	5.6	36	75	13	140	22	20	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061350--1061512	55	3.0	55	85	7	215	34	15	21	28	1.94
1062496--1062565	33	2.1	33	84	5	88	40	10	15	34	1.81
1072149--1072228	18	4.6	18	70	9	67	10	43	2	43	1.51
1072167--1072237	21	3.4	21	71	7	72	9	46	2	40	1.52
1072162--1072261	42	2.4	42	89	0	146	9	45	2	44	1.47
1072121--1072229	51	2.1	52	86	3	150	9	44	2	43	1.50
1073002--1073047	24	1.9	24	86	0	65	4	17	4	73	1.15
1075264--1075337	9	8.6	9	75	8	73	12	45	0	41	1.41
1075282--1075316	12	2.9	12	84	16	54	11	48	0	40	1.39
1075249--1075358	42	2.6	42	92	0	175	11	44	0	42	1.47

Tables:   1   2   3   4   5   6