genome.fa.s88.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold88
Parameters: 2 7 7 80 10 50 1000
Length:  1260485

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103329--1103376	6	8.5	6	93	6	75	68	18	12	0	1.20
1104298--1104323	3	8.7	3	100	0	52	34	30	0	34	1.58
1108467--1108491	12	2.1	12	100	0	50	88	12	0	0	0.53
1110294--1110319	1	26.0	1	100	0	52	100	0	0	0	0.00
1110506--1110542	3	12.7	3	94	5	67	67	0	0	32	0.91
1110714--1110926	52	4.1	53	77	7	168	24	14	23	36	1.93
1111714--1111761	25	2.0	24	84	15	64	50	0	0	50	1.00
1113276--1113306	2	15.5	2	100	0	62	51	0	0	48	1.00
1114504--1114561	28	2.1	28	100	0	116	22	10	34	32	1.88
1120580--1120735	31	5.0	31	84	1	177	26	15	24	33	1.95
1120578--1120735	62	2.5	63	88	1	219	26	15	24	33	1.95
1122223--1122518	72	4.1	72	87	5	429	43	17	7	31	1.77
1122217--1122518	143	2.1	144	89	5	461	43	17	7	31	1.77
1122782--1122841	27	2.2	27	88	5	86	30	3	41	25	1.71
1127293--1127370	15	5.2	14	70	19	59	47	17	0	34	1.48
1127457--1127511	15	3.8	15	72	13	53	69	0	0	30	0.89
1127579--1127635	26	2.1	26	84	12	71	64	0	10	24	1.24
1132134--1132169	2	18.0	2	94	0	63	47	0	2	50	1.15
1133237--1133278	21	2.1	21	86	8	61	35	0	0	64	0.94
1133467--1133495	14	2.0	15	93	6	51	55	0	0	44	0.99
1133487--1133524	20	1.9	20	88	0	58	47	0	0	52	1.00
1134123--1134159	18	2.0	19	89	5	58	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1136681--1136748	27	2.5	27	87	0	100	32	10	10	47	1.71
1138408--1138444	3	12.0	3	94	5	65	35	0	0	64	0.94
1146434--1146490	4	14.2	4	96	0	78	50	7	0	42	1.29
1147239--1147274	2	18.0	2	100	0	72	50	0	0	50	1.00
1149102--1149128	3	9.0	3	100	0	54	66	0	0	33	0.92
1149654--1149695	2	21.0	2	80	9	50	47	7	0	45	1.30
1151129--1151164	8	4.5	8	90	10	56	91	0	0	8	0.41
1151129--1151164	9	4.2	9	93	6	58	91	0	0	8	0.41
1151129--1151164	17	2.2	16	95	5	63	91	0	0	8	0.41
1155284--1155340	27	2.1	27	86	0	78	40	10	7	42	1.66
1156321--1156436	1	116.0	1	100	0	232	0	0	100	0	0.00
1156646--1156680	17	2.1	17	88	0	52	37	2	0	60	1.12
1156646--1156708	19	3.5	18	85	6	74	41	1	0	57	1.08
1156682--1156717	18	2.0	18	88	0	54	50	0	0	50	1.00
1156696--1156813	35	3.4	35	73	16	111	44	2	0	53	1.14
1157849--1157885	14	2.6	15	83	12	51	35	0	2	62	1.10
1159167--1159197	16	1.9	16	93	0	53	22	0	22	54	1.44
1161006--1161041	18	1.9	19	88	5	56	27	2	0	69	1.02
1165062--1165087	2	13.0	2	100	0	52	0	50	0	50	1.00
1165933--1165962	5	6.0	5	96	0	51	56	0	40	3	1.16
1166433--1166468	6	6.0	6	90	0	54	0	22	30	47	1.52
1171838--1171870	14	2.4	14	94	0	57	87	3	0	9	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171928--1171966	15	2.5	15	87	4	51	66	0	33	0	0.92
1172482--1172567	27	3.1	28	73	20	83	41	3	1	53	1.25
1175205--1175236	2	16.0	2	100	0	64	0	50	0	50	1.00
1175271--1175301	2	15.5	2	100	0	62	51	0	0	48	1.00
1180821--1180860	21	1.9	21	90	10	64	42	0	0	57	0.98
1183876--1183988	38	3.0	36	80	10	113	33	19	18	28	1.95
1183958--1184162	31	6.6	31	81	8	211	32	21	14	30	1.94
1183969--1184140	93	1.9	92	87	1	254	30	22	15	31	1.95
1183959--1184162	93	2.2	93	82	1	248	32	22	14	30	1.94
1185746--1185984	87	2.7	88	88	0	354	40	14	12	32	1.84
1189055--1189141	28	3.1	29	80	6	115	19	27	25	27	1.99
1189595--1189621	2	13.5	2	100	0	54	0	48	0	51	1.00
1198395--1198434	1	40.0	1	89	0	62	2	2	95	0	0.34
1205570--1205610	2	20.5	2	100	0	82	51	0	48	0	1.00
1205676--1205705	2	15.0	2	92	0	51	0	53	0	46	1.00
1207752--1207781	2	15.5	2	93	6	53	50	0	0	50	1.00
1212151--1212195	2	22.5	2	95	0	81	0	46	0	53	1.00
1212426--1212455	2	15.0	2	100	0	60	50	0	0	50	1.00
1220754--1220778	2	12.5	2	100	0	50	48	0	0	52	1.00
1229655--1229708	28	1.9	28	88	7	83	51	0	0	48	1.00
1230010--1230076	35	1.9	35	87	6	100	28	1	25	44	1.63
1230199--1230246	22	2.2	22	92	0	78	20	0	35	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1230308--1230349	13	3.2	13	80	6	50	19	4	33	42	1.72
1230358--1230408	7	7.6	7	80	12	54	25	11	29	33	1.91
1230427--1230478	14	3.8	13	80	14	52	26	1	25	46	1.63
1230645--1230751	21	5.1	21	74	6	85	30	0	26	42	1.55
1230665--1231015	7	50.4	7	72	9	132	25	0	34	39	1.61
1230898--1230957	6	9.3	6	87	12	84	16	0	46	36	1.47
1230984--1231048	22	2.9	22	80	8	69	26	1	26	46	1.62
1233870--1233912	19	2.3	19	95	0	77	51	6	0	41	1.29
1241476--1241738	141	1.9	139	91	1	427	29	18	14	37	1.91
1243840--1243871	14	2.3	14	100	0	64	34	0	31	34	1.58
1244738--1245791	538	1.9	543	84	5	1380	40	13	10	35	1.80
1247808--1247846	20	2.0	19	90	5	60	35	0	2	61	1.10
1254331--1254380	26	1.9	26	91	0	82	44	16	28	12	1.83
1255836--1255929	31	3.0	31	96	0	170	42	17	15	24	1.88

Tables:   1   2   3   4   5   6   7   8

The End!