genome.fa.s279.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168104.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_35, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  465013

Tables:   1   2   

This is table  2  of  2  ( 205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357923--357955	17	2.0	17	88	5	50	48	0	12	39	1.40
356022--364289	884	9.3	891	73	10	4198	40	8	9	41	1.68
359430--359923	169	2.9	169	76	8	381	41	7	9	41	1.66
357646--364289	361	18.6	358	73	10	3462	40	8	9	41	1.68
362224--362253	16	1.9	16	93	6	53	43	13	10	33	1.77
356326--364289	722	11.2	709	74	9	4481	40	8	9	41	1.68
364287--366671	180	13.3	180	77	7	2020	40	8	9	41	1.68
364287--366671	537	4.4	541	79	6	2288	40	8	9	41	1.68
364287--366671	718	3.3	711	79	6	2281	40	8	9	41	1.68
366760--366812	18	3.2	16	86	10	63	50	0	7	41	1.30
367197--367672	181	2.6	180	78	3	402	38	9	10	40	1.72
367758--369086	176	7.4	178	75	6	922	41	10	8	39	1.70
367994--368969	538	1.8	538	84	2	1332	42	10	8	37	1.71
369488--369523	16	2.2	17	90	5	56	41	11	0	47	1.39
369476--369523	17	2.8	17	81	12	62	43	10	0	45	1.38
369474--369745	140	1.9	140	82	0	337	38	7	6	46	1.60
369600--371638	180	11.3	180	75	9	1459	41	10	7	39	1.68
370689--370736	18	2.7	18	78	12	55	37	8	6	47	1.59
369601--371604	552	3.7	535	78	9	1581	42	10	7	39	1.68
371651--382157	181	58.6	181	72	10	5612	41	9	8	40	1.68
371679--376855	363	14.5	354	72	12	1588	42	10	7	40	1.68
376955--382159	359	14.6	358	72	10	2669	40	9	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378291--380323	180	11.4	175	71	12	499	41	9	8	40	1.69
379725--380762	177	5.8	173	75	9	594	41	9	8	40	1.68
382180--382786	178	3.3	180	78	6	527	43	8	7	40	1.64
383614--383661	18	2.8	17	78	12	53	47	6	10	35	1.63
383176--383800	177	3.5	172	76	9	526	42	6	9	41	1.63
383731--383868	67	2.0	68	86	4	190	42	8	10	39	1.70
383903--383927	13	1.9	13	100	0	50	40	8	12	40	1.72
383797--388711	180	27.4	181	76	7	3651	40	8	9	41	1.69
383797--388711	362	13.7	359	75	8	3484	40	8	9	41	1.69
386201--386233	18	1.9	17	88	11	50	48	6	6	39	1.53
388934--388987	27	2.0	27	88	0	81	37	9	7	46	1.64
389152--393515	181	24.4	180	74	8	2773	41	9	8	40	1.69
389158--393515	361	12.2	357	74	7	2064	41	9	8	40	1.69
393063--393980	484	1.9	482	83	4	1202	41	10	8	39	1.70
393531--394530	181	5.7	173	76	9	732	40	10	8	41	1.69
394774--397794	181	16.8	178	77	8	2223	42	10	8	39	1.69
394774--397794	539	5.6	538	78	7	2483	42	10	8	39	1.69
398340--398371	16	2.0	17	88	11	50	6	15	18	59	1.57
400909--401669	343	2.2	338	80	12	816	43	8	7	40	1.64
400852--404235	532	6.5	508	76	12	1974	41	9	8	40	1.68
400909--404558	179	20.8	175	73	13	1972	41	9	8	40	1.67
405647--405773	66	2.0	62	81	9	148	42	8	11	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405803--407377	179	8.8	176	72	13	711	39	8	10	41	1.70
414263--414350	45	2.0	45	86	0	122	20	29	25	25	1.99
414258--414362	45	2.3	44	80	6	120	22	33	20	22	1.97
430485--430538	22	2.5	22	87	0	72	25	29	16	27	1.97
444270--445942	181	9.4	178	75	9	1181	41	9	8	40	1.69
444270--445923	356	4.6	356	76	8	1350	41	9	8	40	1.69
444476--445923	715	2.0	710	78	8	1496	41	10	8	39	1.69
444566--445828	534	2.4	534	80	6	1421	42	9	8	39	1.69
446147--446201	20	2.8	20	73	24	55	40	9	5	45	1.59
446190--446620	177	2.4	177	76	10	428	43	9	6	40	1.62
447107--452505	364	15.1	357	74	10	3258	40	8	9	41	1.67
447105--452533	181	30.4	180	75	8	3725	40	8	9	41	1.67
448263--448576	165	1.9	166	80	4	375	40	7	10	41	1.67
448712--448744	17	2.0	17	88	5	50	48	0	12	39	1.40
447107--452505	536	10.1	534	77	9	3497	40	8	9	41	1.67
450745--451073	169	1.9	169	80	4	378	41	8	9	41	1.67
450760--451265	173	2.9	173	77	8	385	40	7	9	42	1.66
452103--452145	16	2.5	16	81	11	50	51	9	4	34	1.55
452401--452677	144	1.9	144	86	1	394	41	11	10	36	1.76
452644--453501	181	4.7	179	76	7	725	41	8	9	41	1.66
451800--453376	859	1.8	862	79	6	1868	41	8	9	41	1.67
452547--453500	181	5.3	181	76	6	711	41	8	9	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452671--453501	362	2.3	360	78	4	863	41	7	9	41	1.66
452838--454164	690	1.9	685	79	5	1467	40	8	9	41	1.68
453528--456583	181	16.9	178	68	13	662	39	8	9	41	1.69
453557--454089	177	3.0	176	79	6	464	40	8	9	40	1.69
453539--456590	359	8.5	348	70	13	1247	39	8	9	41	1.69
453652--454517	177	4.9	176	73	10	570	39	8	10	41	1.69
454605--454637	16	2.1	16	88	11	50	39	9	12	39	1.74
454641--456813	359	6.1	361	74	10	1403	39	8	10	42	1.69
456318--456793	180	2.7	180	78	2	413	39	6	12	41	1.69
456155--457460	654	2.0	652	80	5	1481	38	7	11	42	1.69
456836--465007	360	22.6	360	72	11	4351	40	8	9	41	1.68
456836--459218	180	13.3	182	77	7	1923	40	8	10	41	1.68
456836--465007	537	15.1	541	73	10	4437	40	8	9	41	1.68
459304--459351	18	2.8	17	87	9	62	47	0	8	43	1.33
457795--459297	539	2.8	530	80	6	1184	41	8	9	41	1.67
459739--464994	181	29.4	178	74	8	3244	40	8	9	41	1.68
461447--461492	23	2.0	22	83	4	56	30	0	4	65	1.12
462170--462472	165	1.8	165	85	4	423	41	9	10	38	1.73
459833--465007	712	7.2	706	74	11	2653	40	8	9	41	1.68

Tables:   1   2

The End!