genome.fa.s4.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167829.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_101, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87344

Tables:   1   2   

This is table  2  of  2  ( 232 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37778--37810	17	2.0	17	88	5	50	39	9	0	51	1.34
37944--37976	18	1.9	17	88	11	50	39	6	6	48	1.53
38919--38968	14	3.2	16	81	18	61	46	2	0	52	1.12
39094--39158	27	2.5	26	72	20	64	35	0	6	58	1.23
39410--39459	3	15.7	3	80	12	55	30	4	0	66	1.10
42828--42858	15	2.1	15	93	0	53	51	6	22	19	1.69
43840--43949	52	2.1	52	96	0	202	32	26	10	30	1.90
46092--46411	61	5.3	59	87	5	432	35	10	5	48	1.61
46773--46807	18	1.9	18	88	11	54	0	45	0	54	0.99
46773--46805	17	2.0	17	94	5	59	0	45	0	54	0.99
47418--47453	3	11.7	3	88	5	54	69	0	2	27	1.02
47637--47781	58	2.6	58	92	4	235	48	8	2	40	1.48
48946--48978	18	1.9	17	88	11	50	48	6	6	39	1.53
49112--49144	17	2.0	17	88	5	50	48	0	12	39	1.40
48826--51138	356	6.5	347	73	10	1213	40	7	9	41	1.67
48756--51126	181	13.3	180	75	7	1643	41	8	9	41	1.67
51069--51124	18	3.1	19	75	19	57	42	5	10	41	1.62
51134--51335	59	3.4	59	86	6	257	49	6	9	33	1.63
52020--52080	28	2.2	28	96	0	113	32	11	9	45	1.73
52409--52441	18	1.9	17	88	11	50	48	6	9	36	1.60
52240--52800	181	3.1	180	82	3	650	40	8	9	41	1.67
52844--52873	15	2.0	15	93	0	51	36	0	6	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52866--52908	14	3.1	14	90	6	52	48	0	0	51	1.00
52866--52914	21	2.3	21	86	6	64	44	0	0	55	0.99
52866--52897	7	4.6	7	100	0	64	43	0	0	56	0.99
53168--53778	180	3.4	176	79	7	569	40	10	8	40	1.70
55548--57048	181	8.3	180	73	11	1016	43	8	8	39	1.66
55906--55962	18	3.2	18	75	12	64	36	8	7	47	1.62
55827--56881	551	1.9	555	79	8	1202	44	8	7	39	1.64
57174--57245	15	4.9	16	66	23	50	62	1	0	36	1.04
57178--57225	21	2.3	19	77	19	51	66	2	0	31	1.03
57454--57484	11	2.8	11	95	0	53	35	9	0	54	1.33
59206--59249	22	2.0	22	95	0	79	43	13	11	31	1.80
59642--59982	180	1.9	180	82	4	436	40	8	9	42	1.66
60678--60732	22	2.5	23	82	8	71	58	1	0	40	1.09
60863--60887	13	1.9	13	100	0	50	40	8	0	52	1.31
61417--61446	14	2.1	14	93	0	51	50	0	3	46	1.18
61777--61849	19	3.8	20	76	16	73	54	1	0	43	1.08
61777--61834	20	3.0	20	80	14	59	53	1	0	44	1.10
62136--62190	22	2.5	21	80	8	65	47	0	5	47	1.25
62273--62333	26	2.4	26	83	8	81	42	1	4	50	1.33
63161--63190	13	2.3	13	94	0	51	50	0	0	50	1.00
64014--64674	180	3.7	180	76	3	456	41	8	7	42	1.65
64007--64674	360	1.9	361	79	2	779	41	8	8	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64803--65094	145	2.0	142	81	5	338	41	9	9	39	1.70
65412--65521	12	8.9	13	66	23	51	49	0	2	48	1.15
65431--65483	25	2.1	26	86	10	74	54	0	3	41	1.18
65446--65515	22	3.2	21	84	9	86	51	0	2	45	1.16
65430--65521	6	15.8	6	70	20	54	50	0	3	46	1.17
65406--65518	9	12.8	9	67	21	53	49	0	3	46	1.18
65581--65635	22	2.4	24	82	11	62	49	3	1	45	1.30
65842--66074	128	1.8	129	81	2	290	45	7	8	39	1.63
66101--66942	178	4.7	182	74	10	563	40	7	9	41	1.67
66985--67643	181	3.7	179	77	8	644	41	7	9	41	1.66
66998--67708	359	2.0	357	81	6	823	40	8	9	41	1.69
67871--67907	19	1.9	19	88	0	56	43	0	0	56	0.99
68073--68147	16	4.6	16	72	19	57	46	2	0	50	1.15
68059--68125	19	3.4	19	74	22	57	46	1	0	52	1.09
68066--68134	25	2.8	24	78	6	66	47	1	0	50	1.09
68073--68149	13	6.1	13	68	17	54	46	2	0	50	1.15
68646--68683	20	1.9	20	88	0	58	39	2	0	57	1.12
69147--69190	23	2.0	22	95	4	79	45	0	0	54	0.99
70071--70301	120	1.9	120	87	5	342	35	12	8	43	1.73
70179--70641	180	2.6	181	77	2	500	41	9	7	41	1.65
71377--71428	24	2.1	24	92	3	77	40	5	1	51	1.37
71451--71506	11	5.2	11	77	10	62	42	1	1	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71556--71599	18	2.5	18	88	3	63	43	2	0	54	1.12
71657--71705	22	2.1	23	85	7	64	48	0	0	51	1.00
71667--71727	22	2.7	22	82	5	59	47	1	1	49	1.21
71870--74622	180	15.1	181	71	11	1047	40	8	10	41	1.69
71964--72972	177	5.6	180	74	9	542	40	6	10	42	1.66
73684--74623	362	2.6	355	82	7	1080	41	8	9	39	1.69
74503--74760	138	1.9	137	85	4	358	36	8	10	43	1.70
74898--75312	181	2.3	181	81	3	442	41	9	10	37	1.73
75732--75775	16	2.9	15	80	9	54	52	0	0	47	1.00
76791--76872	28	2.9	29	83	8	89	45	2	1	51	1.22
76879--76971	24	4.1	22	68	17	66	47	2	2	48	1.26
77874--77903	12	2.5	12	94	0	51	56	0	0	43	0.99
77897--77958	19	3.4	19	71	20	60	40	0	3	56	1.15
78576--78622	23	2.1	22	84	11	60	48	2	0	48	1.13
78730--78774	15	2.7	18	86	10	60	48	0	2	48	1.13
79041--79128	33	2.8	30	73	19	72	47	1	0	51	1.08
79082--79124	21	2.2	19	87	8	59	46	0	0	53	1.00
79513--80183	180	3.7	178	78	7	604	40	9	7	41	1.67
81650--81760	13	8.6	14	65	19	53	48	1	0	48	1.18
81808--81866	22	2.8	22	77	10	61	49	0	0	50	1.00
81931--81976	17	2.8	16	78	15	58	52	0	4	43	1.21
82039--82102	20	3.3	19	76	20	60	50	4	1	43	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82196--82263	20	3.6	20	71	15	54	47	4	0	48	1.22
82465--82575	23	4.7	23	72	17	84	39	4	0	55	1.20
82479--82614	52	2.5	54	77	14	145	41	2	0	55	1.15
82684--82748	24	3.0	21	70	16	60	49	1	0	49	1.10
82759--82811	27	2.0	27	85	7	72	50	1	1	45	1.23
82666--82800	40	3.2	41	70	26	113	48	2	0	48	1.22
82808--82874	35	1.9	35	82	11	84	53	1	2	41	1.25
82808--82874	34	1.9	36	82	11	86	53	1	2	41	1.25
83016--83576	182	3.1	176	77	8	517	42	9	7	40	1.65
83903--83995	29	3.2	29	75	14	86	47	1	2	49	1.20
85475--85511	19	1.9	19	89	10	58	48	0	2	48	1.15
85519--85578	8	7.8	8	72	20	56	50	0	0	50	1.00
85504--85573	29	2.4	29	83	7	79	47	0	1	51	1.09
85522--85578	14	3.7	15	79	15	55	50	0	0	49	1.00
86126--86175	23	2.1	23	85	10	66	42	0	2	56	1.11
86136--86187	23	2.2	24	82	3	61	48	0	1	50	1.12
86128--86187	23	2.6	23	76	5	59	46	0	1	51	1.10
86320--86481	46	3.6	43	75	16	132	47	2	0	50	1.14
86337--86422	37	2.3	38	79	13	90	46	1	0	52	1.08
86375--86453	31	2.6	31	83	2	88	48	2	0	49	1.14
86364--86594	15	16.1	14	64	25	60	50	3	1	45	1.25
86438--86524	27	3.4	26	77	13	76	50	1	1	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87140--87173	12	2.8	12	90	4	50	47	2	0	50	1.16
87126--87188	28	2.2	28	81	8	74	46	1	1	50	1.20

Tables:   1   2

The End!