genome.fa.s412.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168237.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_47, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187289

Tables:   1   2   

This is table  1  of  2  ( 232 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30--2182	181	11.9	182	72	13	1094	41	9	8	39	1.69
638--961	179	1.8	179	84	6	442	41	9	8	40	1.68
1484--1906	183	2.3	180	79	8	453	46	8	7	38	1.62
2103--2259	78	2.0	77	93	1	269	39	8	10	41	1.70
2284--3087	181	4.5	176	76	8	571	42	10	7	39	1.68
2653--5929	181	18.2	179	71	13	673	41	10	8	39	1.69
2824--3464	340	1.9	340	84	3	862	43	9	7	40	1.64
3437--3497	16	3.6	16	75	18	61	37	11	3	47	1.56
3447--3499	16	3.0	19	73	21	69	37	11	3	47	1.58
3422--3500	34	2.3	35	88	4	124	37	11	5	45	1.62
3449--3503	17	3.2	17	76	7	67	34	10	3	50	1.55
3125--3858	395	1.9	395	83	4	969	41	9	8	40	1.68
3471--6644	181	17.7	178	72	10	1653	41	10	8	39	1.70
3471--5939	357	6.9	352	75	10	1452	41	11	8	38	1.71
6675--7717	352	2.9	352	79	7	979	42	10	8	38	1.68
7022--7922	180	5.0	180	78	5	820	41	9	8	40	1.70
6700--7914	352	3.4	360	77	8	918	42	9	8	39	1.68
7041--7914	361	2.4	359	77	7	856	41	9	8	39	1.70
7923--7968	20	2.2	20	84	3	56	50	10	2	36	1.50
7931--7970	20	2.0	20	95	0	71	47	15	0	37	1.45
8358--9134	181	4.3	179	75	9	607	42	9	7	40	1.66
9143--11861	181	15.1	177	75	7	1963	40	10	9	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9255--11849	721	3.6	714	76	8	1792	40	10	8	40	1.71
11423--11469	16	2.7	18	72	21	55	38	10	6	44	1.65
11343--11825	177	2.7	176	77	6	408	42	10	8	38	1.70
11892--11924	18	1.9	17	88	11	50	39	6	6	48	1.53
11940--11997	25	2.3	25	96	0	107	34	10	8	46	1.69
12083--13333	180	7.0	178	76	8	999	41	10	8	39	1.70
12111--13143	361	2.9	362	78	7	898	42	10	8	38	1.70
13342--13381	20	2.0	20	90	0	62	47	17	0	35	1.48
14589--16513	181	10.7	180	74	6	1306	40	10	9	40	1.71
14667--16513	716	2.6	719	75	8	1496	39	10	8	40	1.71
16472--16548	34	2.2	34	93	2	127	38	15	3	41	1.66
16307--16730	216	2.0	216	82	1	519	38	10	8	42	1.70
16523--17317	181	4.4	182	78	5	736	39	10	8	41	1.70
17396--17453	25	2.3	25	93	0	98	34	8	8	48	1.65
18155--19939	181	10.0	178	73	10	898	41	10	8	39	1.69
18795--19939	180	6.3	179	74	9	611	41	9	8	39	1.69
19779--19811	18	1.9	17	88	11	50	39	6	6	48	1.53
19647--20200	297	1.9	298	83	8	727	42	8	7	41	1.63
19944--27463	181	42.1	180	73	10	4308	41	10	8	39	1.70
20293--21527	179	6.8	181	73	10	856	40	9	9	40	1.71
21526--25056	358	9.8	356	75	9	2334	41	10	8	40	1.70
19972--27445	718	10.5	712	72	11	2797	41	10	8	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24218--24617	179	2.3	176	80	6	425	40	10	8	40	1.69
24624--24663	17	2.4	17	91	0	62	47	2	15	35	1.58
24632--24665	17	2.0	17	100	0	68	47	0	11	41	1.40
25152--25198	19	2.5	19	93	6	78	29	8	12	48	1.71
25302--25597	163	1.8	162	83	5	391	44	9	9	36	1.70
25455--27447	544	3.7	541	75	7	1203	41	10	8	39	1.69
26241--27050	359	2.3	360	77	7	765	42	10	7	39	1.68
27210--27737	275	1.9	274	80	4	616	38	9	9	42	1.70
27479--28521	181	5.8	179	80	6	962	40	9	8	42	1.66
27038--27911	456	1.9	452	82	4	1087	39	9	8	42	1.69
29246--30296	181	6.0	171	71	13	578	42	9	7	40	1.66
29254--30597	360	3.8	356	77	5	1052	41	9	8	40	1.67
29418--30751	181	7.4	180	74	7	796	41	9	8	41	1.67
30245--30290	19	2.5	19	76	16	53	60	0	2	36	1.09
32457--33523	181	5.9	179	77	7	824	41	9	7	40	1.67
32473--33532	360	2.9	354	76	8	985	41	9	7	40	1.67
33528--37579	181	22.8	179	74	10	2363	41	9	8	40	1.68
33830--34166	171	2.0	171	82	5	414	42	8	7	41	1.63
34145--34621	169	2.8	168	78	11	405	41	10	7	40	1.67
33526--37419	898	4.4	885	75	10	2366	41	9	8	40	1.68
33566--37318	541	7.0	537	73	10	1359	41	9	8	40	1.68
37509--37662	78	2.0	77	89	6	240	41	7	9	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37587--38682	181	6.1	180	76	7	859	41	9	8	40	1.69
38765--38797	15	2.3	15	89	5	50	72	0	0	27	0.85
38341--39009	325	2.1	327	81	5	773	41	10	7	40	1.68
38668--40436	181	9.9	180	76	7	1306	41	9	8	40	1.67
38160--39185	506	2.0	507	82	5	1225	41	9	7	40	1.67
37978--39252	687	1.9	690	81	5	1594	40	10	8	40	1.68
38668--40382	357	4.8	351	78	7	1143	41	9	7	40	1.67
40542--40578	7	5.3	7	87	12	58	27	0	0	72	0.84
40543--40584	8	5.5	8	83	16	54	23	0	0	76	0.79
40542--40584	21	2.0	21	95	4	77	25	0	0	74	0.82
40603--40774	4	42.0	4	67	17	52	31	4	2	61	1.27
40603--40633	15	2.1	15	93	0	53	25	0	3	70	1.02
40683--40747	22	3.2	20	74	17	62	32	4	3	60	1.33
40669--40747	40	2.0	40	89	0	122	34	5	2	58	1.34
40694--40766	14	5.4	14	73	18	55	34	2	1	61	1.19
40683--40834	20	7.4	22	74	17	94	29	4	3	62	1.31
40719--40834	20	5.6	20	78	6	115	28	4	2	64	1.25
40729--40834	41	2.5	41	81	6	115	28	4	2	64	1.28
41193--41250	31	1.9	31	82	10	75	25	10	15	48	1.77
41761--41821	6	9.5	6	77	19	61	16	3	0	80	0.84
41766--41825	21	3.0	20	80	17	72	15	5	0	80	0.88
41756--41821	27	2.6	25	86	9	96	16	4	0	78	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41839--41995	58	2.7	58	90	3	237	42	7	14	36	1.74
52426--52477	8	6.8	8	79	16	65	82	0	9	7	0.84
52407--52490	32	2.7	30	85	14	118	79	0	10	9	0.93
52407--52483	10	7.7	10	79	17	81	80	0	10	9	0.91
52407--52462	11	5.2	11	83	12	80	82	0	8	8	0.86
52407--52490	30	2.8	31	85	8	120	79	0	10	9	0.93
53514--53742	42	5.4	42	84	4	291	23	16	22	37	1.93
53487--53742	83	3.0	82	85	5	300	23	16	21	37	1.93
53932--53992	27	2.3	27	88	5	88	31	1	0	67	1.01
53952--53996	6	7.5	6	85	9	56	33	0	0	66	0.92
53929--53984	7	8.1	7	82	11	71	26	1	0	71	0.96
53930--53990	20	3.1	19	86	9	77	29	1	0	68	0.99
54022--54231	4	50.0	4	68	18	81	31	4	1	62	1.23
54023--54119	39	2.5	39	96	0	176	30	4	0	64	1.12
54124--54204	42	1.9	42	89	0	126	34	4	2	58	1.33
54020--54223	13	14.6	14	67	26	78	32	4	1	61	1.24
54015--54231	42	5.6	38	73	18	123	31	4	1	62	1.25
54138--54253	20	5.5	22	78	11	102	30	5	3	61	1.34
54138--54292	42	3.7	41	79	9	118	29	5	2	63	1.29
54176--54292	20	5.6	20	78	8	108	27	5	1	65	1.23
54186--54309	42	3.0	42	82	9	130	25	5	2	66	1.25
54648--54702	19	2.9	18	78	5	56	27	12	18	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54769--54807	20	2.0	20	89	0	60	35	25	17	20	1.95
55091--55217	3	44.7	3	73	13	108	28	0	2	68	1.07
55091--55217	14	8.9	15	78	10	108	28	0	2	68	1.07
55098--55158	17	3.6	17	93	6	99	36	0	0	63	0.94
55170--55219	17	2.7	19	77	20	61	18	2	0	80	0.82
55236--55393	58	2.7	58	93	0	271	43	8	13	35	1.74
55865--55914	16	3.0	17	83	16	77	36	10	8	46	1.67
55875--60620	181	26.5	180	74	8	2941	41	10	7	39	1.68
55875--60604	361	13.2	359	74	7	3154	41	10	7	39	1.68
59109--59144	16	2.1	17	90	10	56	41	5	8	44	1.58

Tables:   1   2