genome.fa.s446.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168271.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_50, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165179

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116491--117265	346	2.2	348	79	9	802	39	8	9	42	1.67
117921--120967	181	17.0	181	75	7	2278	40	8	9	40	1.69
118081--120966	541	5.4	544	74	9	1697	40	8	9	40	1.69
121709--121757	20	2.5	20	100	0	98	24	30	20	24	1.98
128834--128859	12	2.2	12	100	0	52	19	7	23	50	1.73
130414--131945	179	8.6	180	73	10	557	41	9	9	40	1.69
132056--133430	181	7.6	180	78	4	1150	40	10	8	41	1.70
132056--133439	361	3.8	357	77	7	1213	40	10	8	41	1.70
130396--133431	543	5.7	531	74	9	2137	40	9	8	40	1.69
134020--134870	181	4.8	176	76	9	714	42	9	7	40	1.66
134756--134998	126	1.9	127	81	7	298	46	9	6	37	1.62
134929--135262	181	1.8	181	85	9	466	43	10	6	39	1.66
136070--147499	181	63.7	181	75	7	7907	40	8	9	41	1.68
136583--136628	16	2.6	18	73	16	51	43	4	10	41	1.59
137249--137302	21	2.6	21	88	8	76	40	9	11	38	1.73
140198--140239	18	2.4	18	84	15	61	45	0	9	45	1.36
136130--147535	722	15.9	713	74	9	5427	40	8	9	41	1.68
142528--142560	18	1.9	17	88	11	50	48	3	6	42	1.43
144482--144984	174	2.9	174	79	4	438	40	7	9	42	1.65
144861--144893	18	1.9	17	88	11	50	48	3	6	42	1.43
147524--147727	106	1.9	106	84	8	274	35	9	6	48	1.63
147659--148340	181	3.8	181	76	5	488	38	8	10	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148482--149703	181	6.8	179	77	5	1024	40	9	8	41	1.68
156034--156215	73	2.5	73	83	4	208	30	23	22	23	1.99
157969--158006	18	2.1	18	95	0	67	36	2	23	36	1.69
158000--158038	20	2.0	20	94	0	69	28	2	20	48	1.62
158390--158431	21	2.0	22	95	4	77	28	26	26	19	1.98
160363--160759	178	2.2	181	80	7	427	42	8	7	42	1.62
160882--165035	181	23.3	181	73	10	1271	41	9	8	40	1.68
161442--161749	162	1.9	162	82	1	384	40	9	7	42	1.64
161587--165168	181	20.0	182	75	8	2501	41	9	8	40	1.68
160920--165168	720	6.0	708	75	9	2696	41	9	8	40	1.68

Tables:   1   2

The End!