genome.fa.s468.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168293.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_52, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159655

Tables:   1   2   3   

This is table  3  of  3  ( 355 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132465--132511	17	2.8	17	87	6	60	51	0	0	48	1.00
132471--132535	19	3.5	20	74	17	52	46	3	0	50	1.17
132655--132717	30	2.1	30	82	5	74	46	3	0	50	1.17
132812--132857	15	3.1	15	82	11	51	50	2	0	47	1.13
132827--132879	21	2.5	22	75	19	60	49	5	0	45	1.26
133196--133265	16	4.1	18	74	20	60	41	0	1	57	1.08
133208--133256	14	3.3	15	80	13	57	40	0	2	57	1.10
133413--133457	6	7.8	6	76	18	51	48	0	2	48	1.13
133413--133459	17	2.8	17	83	6	60	46	0	2	51	1.13
133421--133508	25	3.5	25	73	19	76	45	2	3	48	1.31
133498--133568	30	2.3	30	83	11	83	46	2	4	46	1.37
133554--133578	13	1.9	13	100	0	50	60	0	0	40	0.97
133617--133763	26	5.6	25	71	17	79	46	0	2	50	1.17
133626--133729	53	1.9	55	81	16	128	44	0	1	52	1.18
133679--133710	9	3.7	9	95	4	57	43	0	0	56	0.99
133627--133770	22	6.9	20	67	20	66	46	0	2	50	1.18
134796--135179	59	6.5	59	85	6	419	35	14	6	44	1.71
134796--135179	120	3.3	116	85	6	463	35	14	6	44	1.71
134848--135179	59	5.6	59	90	2	450	35	13	6	44	1.69
134848--135191	60	5.8	60	89	3	453	34	13	6	45	1.68
135283--135319	13	2.8	13	84	15	58	67	0	0	32	0.91
136126--136168	17	2.4	18	81	18	54	76	4	0	18	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136186--136246	26	2.4	24	78	21	63	57	4	3	34	1.36
136188--136303	49	2.3	50	81	11	130	60	2	3	33	1.27
136207--136311	39	2.5	40	80	12	104	61	1	3	32	1.24
136344--136385	11	3.5	12	87	9	59	80	2	0	16	0.81
136335--136385	19	2.8	19	77	13	54	76	1	0	21	0.88
136551--136748	46	4.4	45	85	5	269	38	21	17	22	1.93
136752--136810	10	5.8	10	77	15	59	5	0	8	86	0.70
136751--136787	18	2.0	19	94	5	67	8	0	5	86	0.70
136752--136808	13	4.4	13	84	4	62	5	0	8	85	0.72
136841--137151	41	7.6	41	82	5	344	41	20	13	24	1.88
137442--137523	43	1.9	42	85	7	112	34	17	10	37	1.85
138983--139032	25	2.0	24	85	11	66	4	16	0	80	0.87
142961--143284	117	2.8	118	87	5	471	37	13	7	41	1.72
142960--143293	59	5.7	57	82	8	377	35	13	7	43	1.72
143727--143765	19	2.0	20	90	5	62	30	15	20	33	1.94
143914--143965	12	4.5	11	75	15	52	50	21	3	25	1.65
144208--144232	13	1.9	13	100	0	50	72	8	12	8	1.29
144253--144292	20	2.0	21	85	14	57	65	7	5	22	1.38
144678--144718	20	2.0	22	85	9	59	41	2	0	56	1.13
145073--145128	21	2.7	21	81	10	71	57	1	0	41	1.09
145065--145139	17	4.2	17	68	24	55	56	1	0	42	1.08
145054--145161	55	2.0	54	83	5	137	51	1	0	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145104--145179	12	6.6	12	70	19	54	50	1	0	48	1.09
145144--145209	24	2.8	24	75	20	61	48	1	1	48	1.20
145054--145205	55	2.8	53	79	8	128	50	1	0	46	1.17
145259--145364	10	10.4	10	69	21	60	50	0	0	47	1.13
145258--145358	41	2.5	40	78	12	107	50	0	0	47	1.14
145303--145372	30	2.3	31	78	16	74	48	1	1	48	1.19
145709--145742	10	3.5	10	92	4	52	58	0	0	41	0.98
145840--145883	18	2.4	18	78	10	54	40	0	0	59	0.98
146351--146417	10	7.3	10	71	25	51	53	0	0	46	1.00
146351--146430	35	2.4	33	84	12	94	51	0	1	47	1.08
146351--146411	18	3.4	17	76	17	61	54	0	0	45	1.00
146361--146417	19	3.2	19	71	21	59	54	0	0	45	0.99
146921--146954	16	2.3	15	90	10	52	38	0	8	52	1.33
146967--147018	24	2.1	25	82	10	63	55	1	1	40	1.22
147182--148269	181	6.0	182	80	6	985	40	9	8	41	1.68
148775--148819	22	2.0	22	91	0	72	46	2	0	51	1.13
148775--148829	22	2.6	21	76	21	60	47	1	1	49	1.23
149092--149151	30	2.0	31	83	9	79	48	1	3	46	1.28
149481--149542	16	3.7	17	81	14	67	37	0	4	58	1.20
149655--149725	21	3.5	19	78	14	63	54	4	2	38	1.34
149670--149788	22	5.4	22	70	15	93	52	7	4	36	1.49
150234--150268	18	1.9	18	94	0	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150236--150311	25	3.1	25	79	9	77	52	3	0	43	1.19
150249--150295	13	3.6	14	78	18	57	51	4	0	44	1.21
150227--150317	47	2.0	44	81	12	103	53	4	0	41	1.21
150385--150420	18	1.9	19	88	5	56	55	2	2	38	1.29
151123--151192	21	3.2	21	75	17	63	57	1	1	40	1.17
151433--151493	32	1.9	33	83	6	81	57	0	1	40	1.08
151507--151541	16	2.1	17	89	5	54	45	0	2	51	1.16
151714--151753	15	2.6	16	84	15	57	45	2	0	52	1.14
152559--152612	21	2.9	18	77	22	58	48	0	0	51	1.00
152564--152609	19	2.3	21	82	17	62	47	0	0	52	1.00
152573--152623	14	3.6	14	82	10	52	49	0	0	50	1.00
152559--152612	9	5.7	10	78	22	55	48	0	0	51	1.00
152566--152622	22	2.6	22	78	16	64	50	0	0	49	1.00
152546--152623	30	2.6	29	80	13	79	51	0	0	48	1.00
152885--153408	177	3.0	175	78	8	528	38	7	10	43	1.68
153604--153628	13	1.9	13	100	0	50	40	4	0	56	1.18
153675--153708	17	1.9	18	88	5	52	58	0	0	41	0.98
153967--154007	21	2.0	21	90	0	64	41	0	4	53	1.22
154000--154043	15	2.8	16	80	19	56	56	0	4	38	1.20
153998--154045	23	2.1	22	81	11	53	54	0	4	41	1.20
154152--154184	17	2.0	17	88	5	50	54	0	0	45	0.99
154327--154386	24	2.5	24	78	5	59	46	3	1	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154843--154896	29	1.9	27	85	7	72	42	1	0	55	1.10
155011--155045	17	2.0	18	88	5	54	51	0	0	48	1.00
154995--155048	24	2.4	21	77	20	56	48	0	0	51	1.00
155325--155366	18	2.3	18	88	8	59	38	0	0	61	0.96
155972--156019	14	3.3	14	80	13	53	45	0	4	50	1.21
155979--156017	17	2.3	17	86	8	53	41	0	5	53	1.23
156292--156321	12	2.4	13	94	5	53	50	0	0	50	1.00
156304--156389	25	3.2	26	74	20	79	48	1	0	50	1.08
156320--156433	17	6.2	17	69	20	54	48	0	0	50	1.13
156451--156496	13	3.4	14	82	11	60	50	0	0	50	1.00
156430--156506	28	2.7	29	81	16	74	48	1	1	49	1.17
156778--156833	17	3.3	16	80	9	67	51	0	1	46	1.11
156764--156835	18	4.0	18	75	15	69	50	0	1	48	1.09
156907--156989	27	3.2	27	79	15	86	50	2	2	44	1.28
157336--157416	36	2.2	36	82	10	94	48	3	1	46	1.27
157502--157545	13	3.5	13	85	14	65	47	4	0	47	1.22
157504--157547	20	2.2	20	83	0	52	47	4	0	47	1.22
157497--157545	25	2.0	25	92	8	82	48	4	0	46	1.20
157511--157552	20	2.1	20	86	0	57	45	2	0	52	1.13
157817--157865	24	2.0	24	85	14	66	51	2	0	46	1.12
158490--158563	21	3.5	20	76	15	78	40	0	4	55	1.19
158495--158564	23	3.1	23	71	21	67	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158974--159027	22	2.5	22	84	6	65	51	1	1	44	1.22
158987--159027	11	3.7	11	90	0	64	56	0	0	43	0.99
159211--159250	20	2.0	20	90	0	62	52	2	0	45	1.14
159290--159369	19	4.0	21	67	16	62	55	3	0	41	1.18
159360--159423	16	4.1	16	74	8	60	45	4	1	48	1.32

Tables:   1   2   3

The End!