genome.fa.s468.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168293.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_52, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159655

Tables:   1   2   3   

This is table  2  of  3  ( 355 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92700--92825	20	6.1	20	68	22	75	43	0	1	54	1.09
93268--93311	16	2.8	15	83	10	52	45	0	0	54	0.99
93574--93647	15	4.7	16	74	15	66	58	1	1	39	1.15
94108--94183	24	3.2	22	78	14	80	44	1	3	50	1.29
94601--94692	13	6.9	13	68	21	57	45	1	3	50	1.25
94928--94981	10	5.1	10	77	18	56	42	0	1	55	1.10
95024--95099	32	2.4	32	82	10	86	52	0	2	44	1.14
95140--95168	15	1.9	15	100	0	58	34	0	3	62	1.12
95281--95726	181	2.5	177	82	7	535	39	8	8	42	1.66
95825--95883	25	2.3	27	82	8	77	45	3	0	50	1.18
97783--97825	23	1.9	22	81	13	52	46	2	6	44	1.43
97872--98009	24	5.8	24	69	19	83	49	0	2	47	1.16
99273--99319	18	2.7	18	80	12	62	40	10	4	44	1.59
99621--99653	18	1.9	17	88	11	50	39	12	6	42	1.67
99502--99895	181	2.2	181	81	5	447	38	12	9	39	1.76
99626--100196	301	1.9	301	82	2	725	38	11	8	41	1.71
99943--100289	181	1.9	181	84	0	469	42	10	7	39	1.68
100718--100754	19	1.9	19	88	0	56	35	10	13	40	1.80
101364--101414	12	4.1	13	82	5	52	43	0	1	54	1.11
101364--101414	25	2.0	25	85	7	68	43	0	1	54	1.11
103090--103132	22	2.0	22	86	9	61	39	0	6	53	1.28
103820--103861	17	2.5	17	84	7	50	38	4	0	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103855--103892	20	1.9	20	88	0	58	50	5	0	44	1.24
104157--104190	17	1.9	18	88	5	52	41	0	0	58	0.98
104238--104262	13	1.9	13	100	0	50	56	0	4	40	1.18
104479--105004	182	2.9	179	80	5	562	42	10	7	38	1.69
105982--106068	25	3.3	26	75	20	81	48	1	1	49	1.16
106090--106119	15	1.9	16	93	6	53	46	0	0	53	1.00
106129--106174	13	3.4	14	82	11	60	50	0	0	50	1.00
106038--106184	16	9.6	15	66	21	65	48	0	1	49	1.14
106129--106184	28	1.9	30	82	13	73	50	0	0	50	1.00
105973--106177	89	2.3	91	80	13	221	48	1	1	48	1.19
106571--106641	24	2.8	24	80	16	72	47	2	1	47	1.25
106900--106945	23	1.9	23	86	8	65	52	0	2	45	1.13
107029--107068	11	3.2	12	80	19	55	55	0	0	45	0.99
107173--107274	20	5.8	17	69	27	63	43	1	0	53	1.18
107173--107249	20	4.1	19	73	20	72	45	2	0	51	1.14
107213--107297	26	3.1	27	79	14	86	37	1	1	60	1.12
107255--107307	19	2.8	19	86	11	65	32	0	1	66	1.03
107249--107307	28	2.1	29	83	3	75	32	0	3	64	1.10
108148--108197	16	3.2	16	83	8	59	56	2	0	42	1.11
108161--108209	20	2.4	22	86	10	68	53	4	0	42	1.20
108391--108428	4	10.0	4	83	11	53	47	0	0	52	1.00
108391--108428	15	2.5	15	87	8	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108391--108446	19	3.0	18	80	15	60	46	0	1	51	1.11
108686--108733	5	9.2	5	86	8	69	58	0	0	41	0.98
108928--108978	24	2.1	24	88	0	75	49	3	1	45	1.32
109310--109337	14	2.0	14	100	0	56	42	0	0	57	0.99
109882--109948	31	2.2	31	86	5	91	43	2	0	53	1.16
109885--109948	34	2.0	34	87	9	98	43	3	0	53	1.16
109892--109986	39	2.4	38	84	10	113	41	3	1	54	1.23
110089--110165	12	6.2	12	72	20	52	48	2	0	49	1.15
110093--110151	20	3.5	17	75	15	52	49	1	0	49	1.11
110113--110165	23	2.3	23	79	20	58	47	3	0	49	1.19
110283--110414	6	22.2	6	66	22	57	51	3	0	44	1.19
110278--110339	28	2.2	29	80	13	76	50	3	0	46	1.17
110511--110545	18	1.9	18	94	0	61	54	0	0	45	0.99
110513--110578	25	2.6	25	78	7	71	53	3	0	43	1.16
110526--110572	13	3.6	14	78	18	57	51	4	0	44	1.21
110511--110627	14	7.5	15	71	22	59	51	2	0	45	1.21
110663--110698	18	1.9	19	88	5	56	55	2	2	38	1.29
111406--111448	22	2.0	21	86	4	59	55	2	2	39	1.25
111956--111985	14	2.1	14	93	0	51	53	0	0	46	1.00
111978--112036	24	2.5	22	79	17	64	42	5	0	52	1.23
112256--112323	18	3.6	18	79	18	75	58	0	0	41	0.98
112246--112313	18	3.5	20	73	20	63	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112260--112373	9	12.0	9	70	20	54	50	0	0	48	1.06
112439--112495	21	2.7	21	81	8	62	52	0	0	47	1.00
112453--112498	15	2.9	16	81	12	51	50	0	0	50	1.00
112448--112495	24	2.1	22	84	7	60	50	0	0	50	1.00
112870--112905	18	2.0	18	88	0	54	50	5	0	44	1.25
113641--113686	22	2.1	23	92	8	78	45	4	0	50	1.21
113679--113717	19	2.0	20	85	14	55	56	2	5	35	1.35
113750--113807	19	3.2	19	79	16	77	46	0	1	51	1.11
113750--113818	19	3.6	18	82	11	68	44	0	1	53	1.09
113807--113858	21	2.5	20	72	12	50	44	1	0	53	1.11
114213--114237	13	1.9	13	100	0	50	52	0	8	40	1.31
114309--114342	16	2.0	18	88	11	54	61	5	0	32	1.20
114345--114383	13	2.8	14	88	11	62	48	0	0	51	1.00
114910--115011	45	2.2	46	77	10	109	50	2	0	46	1.16
114933--115026	21	4.5	20	70	17	57	46	2	0	51	1.13
114952--115033	28	3.0	27	80	13	89	46	1	0	52	1.08
114980--115037	10	6.0	10	75	18	52	41	1	0	56	1.09
115962--116472	177	2.9	179	80	5	563	40	7	10	41	1.67
116702--116768	23	2.8	23	84	8	73	59	0	0	40	0.97
116832--116902	24	2.9	24	75	19	74	52	2	0	45	1.15
116840--116907	26	2.6	27	75	25	67	51	1	0	47	1.09
117317--117360	18	2.4	18	81	7	54	40	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117741--117773	13	2.4	14	90	10	50	42	6	0	51	1.26
118008--118050	7	6.3	7	84	12	54	53	2	0	44	1.13
118008--118050	20	2.1	21	86	4	61	53	2	0	44	1.13
118098--118161	20	3.3	20	72	16	55	42	3	0	54	1.16
118641--118678	3	12.7	3	100	0	76	65	0	0	34	0.93
118721--118758	20	1.9	20	88	0	58	71	2	21	5	1.19
119691--119761	7	9.3	7	75	20	54	16	1	1	80	0.86
119689--119739	18	2.9	17	82	5	57	15	1	1	80	0.89
119702--119776	16	4.6	17	75	9	68	22	1	1	74	0.97
120172--120297	31	4.1	30	71	11	96	46	30	0	21	1.57
120171--120238	16	4.2	16	81	5	84	51	30	0	17	1.46
120197--120394	15	13.4	14	65	14	69	47	29	1	21	1.58
120313--120394	30	2.7	30	85	9	105	48	26	1	23	1.58
126882--126919	15	2.4	16	84	16	53	86	0	2	10	0.66
126884--126919	17	2.2	16	90	5	54	88	0	2	8	0.59
128660--128739	41	2.0	41	92	5	135	36	20	16	27	1.93
128891--128956	22	3.0	22	73	8	62	30	27	15	27	1.96
128888--128979	44	2.1	44	81	4	105	31	25	16	27	1.96
129039--129127	22	4.0	22	80	13	103	30	24	16	28	1.97
128819--129267	157	2.8	158	85	6	553	30	17	16	35	1.91
129045--129136	44	2.1	44	91	4	150	30	25	17	27	1.97
129103--129407	128	2.4	128	80	5	364	32	16	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129468--129860	103	3.7	103	77	9	360	24	20	15	40	1.90
129664--129706	22	2.0	22	90	0	68	30	20	16	32	1.95
129773--129816	22	2.0	22	86	0	61	31	25	13	29	1.94
129564--129945	109	3.6	105	78	9	363	25	20	15	38	1.92
130046--130105	22	2.7	22	86	2	84	28	25	16	30	1.97
129943--130184	131	1.8	131	82	6	312	23	20	17	38	1.93
130367--130402	19	1.9	19	88	5	56	72	0	19	8	1.10
132341--132379	16	2.4	16	86	0	60	48	2	0	48	1.15
132339--132397	27	2.1	28	87	9	84	47	3	0	49	1.18
132366--132404	11	3.7	11	80	13	55	46	2	0	51	1.14

Tables:   1   2   3