genome.fa.s479.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168304.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_53, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157624

Tables:   1   2   3   

This is table  2  of  3  ( 293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106719--106757	17	2.3	17	86	8	53	51	5	0	43	1.24
106710--106758	15	3.2	16	78	16	59	44	6	0	48	1.27
106733--106795	17	3.6	16	75	21	54	49	1	1	47	1.20
107276--107310	10	3.7	10	85	14	56	54	0	0	45	0.99
107719--107805	25	3.2	29	68	28	73	48	1	2	48	1.21
109635--109695	27	2.3	27	83	8	72	54	0	1	44	1.10
109956--110046	23	4.0	23	71	22	66	47	1	2	49	1.21
110011--110057	19	2.3	20	85	7	60	44	0	4	51	1.21
109956--110087	17	8.1	16	69	20	69	43	2	3	50	1.29
110313--110355	20	2.0	20	86	8	59	51	2	2	44	1.27
110511--110574	33	1.9	33	84	6	85	40	4	6	48	1.49
110759--110806	23	2.1	22	88	3	69	41	0	2	56	1.11
110898--111246	178	2.0	178	82	5	429	38	6	12	42	1.68
111467--111541	27	2.6	28	78	14	82	45	0	1	53	1.08
112073--112117	17	2.6	17	83	16	58	48	2	0	48	1.13
112259--112339	23	3.3	24	73	22	71	50	1	1	46	1.17
112506--112556	21	2.4	22	81	12	63	37	5	0	56	1.23
112511--112560	22	2.2	24	80	16	63	36	6	0	58	1.23
112756--112785	12	2.6	12	94	5	53	46	0	0	53	1.00
113322--113397	15	5.2	15	78	9	61	48	0	0	51	1.00
113282--113438	81	1.9	80	83	16	201	48	1	0	49	1.13
113298--113448	28	5.5	26	70	24	66	48	1	0	49	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113465--113502	16	2.3	17	81	4	51	50	0	0	50	1.00
113916--113960	17	2.8	15	78	15	54	57	0	2	40	1.11
114117--114196	22	3.3	26	70	26	68	47	0	2	50	1.14
114087--114195	48	2.3	48	80	15	127	47	1	1	48	1.23
114226--114281	28	1.9	30	82	13	73	48	1	0	50	1.11
115327--115389	11	6.1	11	72	23	57	53	0	0	46	1.00
115327--115386	20	2.9	21	82	7	68	55	0	0	45	0.99
115328--115388	32	2.0	30	87	12	88	55	0	0	44	0.99
115328--115418	32	2.9	32	81	10	84	51	0	1	47	1.07
115339--115418	21	3.9	21	78	18	87	50	0	1	48	1.08
115585--115636	12	4.3	13	79	18	51	46	1	1	50	1.23
115615--115654	9	4.2	10	79	20	50	47	0	0	52	1.00
115710--115755	14	3.1	14	87	9	56	43	0	2	54	1.12
115727--115824	7	16.7	6	70	23	50	47	0	0	52	1.00
115727--115833	20	5.6	20	67	24	61	46	0	0	53	1.00
115730--115782	25	2.1	25	86	6	72	45	0	0	54	0.99
115762--115821	15	4.1	15	80	4	59	51	0	0	48	1.00
115705--115832	29	4.3	30	71	17	99	46	0	0	53	1.05
116005--116057	18	3.0	18	76	13	56	54	0	0	45	0.99
116984--117084	12	8.3	12	66	18	57	46	1	1	49	1.24
117200--117259	26	2.3	26	81	13	63	55	0	1	43	1.10
117213--117262	10	5.1	10	76	11	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117359--117424	34	1.9	34	84	6	89	50	1	1	46	1.20
117373--117420	15	3.3	13	81	18	51	50	2	2	45	1.25
117518--117552	18	1.9	18	88	0	52	54	0	0	45	0.99
117512--117574	34	1.9	31	84	9	81	49	0	0	50	1.00
117541--117588	15	3.4	15	80	8	57	41	0	0	58	0.98
117686--117763	18	4.2	19	70	25	60	48	3	1	46	1.28
117671--117773	29	3.8	26	75	22	104	49	2	1	45	1.28
117671--117772	27	3.7	27	75	19	104	50	2	1	45	1.28
117824--117871	14	3.4	14	80	11	53	41	2	2	54	1.24
118348--118443	50	1.9	49	81	6	113	50	3	0	46	1.17
119845--119887	12	3.4	12	81	9	50	60	0	2	37	1.10
119840--119890	22	2.4	21	78	18	61	58	0	1	39	1.09
119884--119927	22	2.1	22	87	8	65	40	6	0	52	1.28
120125--120187	28	2.2	28	83	8	74	39	1	6	52	1.37
120235--120287	27	2.0	26	85	3	70	47	0	7	45	1.31
120319--120356	14	2.7	15	80	16	53	44	0	0	55	0.99
120317--120377	18	3.1	19	76	11	61	45	0	0	54	1.00
122134--122176	16	2.7	16	79	13	52	53	0	2	44	1.13
122201--122259	14	4.1	14	72	21	50	42	1	0	55	1.09
122312--122385	15	4.9	15	74	11	53	45	2	0	51	1.15
122348--122404	27	2.2	25	84	6	69	54	0	0	45	0.99
123182--123256	28	2.6	28	74	12	73	46	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123451--123495	18	2.4	18	81	7	54	46	0	2	51	1.13
123551--123592	20	2.1	20	86	0	57	50	7	0	42	1.30
123588--123627	19	2.1	19	86	9	55	47	0	0	52	1.00
125041--125081	19	2.2	19	86	0	55	48	4	0	46	1.23
125726--125770	14	3.1	14	80	3	54	51	2	0	46	1.13
126402--126529	68	1.9	69	88	4	197	22	12	7	57	1.61
126744--126790	14	3.3	14	80	19	53	78	2	2	17	0.94
126755--126791	15	2.4	16	82	13	51	81	2	0	16	0.81
127589--127673	43	2.0	41	86	4	116	47	20	12	20	1.82
127589--127683	43	2.3	41	82	10	113	46	20	13	20	1.84
127890--128058	42	3.9	42	71	17	137	33	15	11	38	1.85
128106--128354	25	10.6	25	78	9	199	33	13	10	42	1.79
128088--128379	46	6.3	47	82	5	255	33	14	10	41	1.80
128298--128379	21	3.9	21	93	1	137	37	18	10	32	1.86
128277--128379	42	2.3	43	86	8	145	34	17	10	36	1.85
128223--128386	50	3.6	44	77	8	134	35	13	10	40	1.80
129944--129991	22	2.2	21	85	10	62	58	2	2	37	1.22
130004--130042	19	2.1	18	90	4	60	35	2	7	53	1.43
130093--130149	23	2.5	22	78	10	62	45	3	1	49	1.29
130087--130153	11	5.9	12	73	13	54	47	2	1	47	1.26
130221--130278	10	5.0	12	75	19	52	48	1	1	48	1.22
130336--130380	20	2.4	18	82	13	63	48	0	6	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130340--130377	20	1.9	20	94	0	67	47	0	7	44	1.32
130498--130549	23	2.2	23	80	12	61	50	1	1	46	1.23
130548--130574	14	1.9	14	100	0	54	51	3	0	44	1.19
131740--131783	11	3.7	11	77	16	52	52	0	0	47	1.00
131754--131801	16	2.9	16	81	12	62	45	0	2	52	1.12
131751--131808	18	3.4	18	75	17	54	50	0	1	48	1.11
131893--131941	19	2.5	20	78	18	59	61	0	6	32	1.21
131847--131939	44	2.1	45	81	2	107	55	3	4	36	1.35
133925--134276	180	2.0	180	82	1	427	40	7	10	40	1.69
134009--134553	299	1.8	300	83	2	720	42	8	11	37	1.72
134296--134867	181	3.2	179	76	8	484	42	9	9	37	1.71
135211--135254	19	2.2	20	84	11	56	36	4	2	56	1.32
135641--135717	33	2.4	32	80	8	77	48	2	1	48	1.23
135648--135749	16	7.1	14	69	21	54	49	1	1	47	1.24
135661--135747	28	3.1	27	71	25	74	49	2	1	47	1.21
135797--135848	22	2.2	25	83	10	74	55	0	0	44	0.99
135797--135841	17	2.6	17	82	6	56	55	0	0	44	0.99
135851--135893	17	2.5	17	79	20	54	53	0	0	46	1.00
135831--135879	21	2.4	19	83	10	62	48	0	0	51	1.00
135883--135941	21	2.7	21	84	5	73	45	5	3	45	1.42
135924--135969	17	2.8	16	78	15	58	52	0	4	43	1.21
136032--136089	20	3.1	18	70	29	50	51	6	1	39	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136152--136199	20	2.5	20	86	3	62	45	2	0	52	1.12
136138--136202	20	3.4	20	72	16	57	41	1	0	56	1.08
136350--136376	13	2.1	13	100	0	54	37	0	0	62	0.95
136347--136482	34	4.3	32	71	18	88	46	2	0	51	1.13
137295--137358	34	1.9	33	87	9	94	54	3	6	35	1.41
137342--137402	17	3.3	19	80	19	67	55	0	4	39	1.21
137434--137509	13	6.3	13	71	22	51	50	0	0	50	1.00
137724--137763	21	2.0	20	85	14	55	50	0	2	47	1.14
137834--137864	14	2.2	14	94	0	53	61	3	0	35	1.12
137988--138047	29	2.0	31	83	6	79	53	5	1	40	1.33

Tables:   1   2   3