genome.fa.s5.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167830.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87221

Tables:   1   2   

This is table  1  of  2  ( 237 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471--971	180	2.8	180	79	1	502	42	7	7	41	1.63
860--1095	120	2.0	119	85	7	327	44	8	12	35	1.72
979--1306	181	1.8	181	80	5	394	38	10	12	38	1.78
1965--2691	177	4.1	178	78	5	727	40	7	10	41	1.69
2898--3176	138	2.0	138	100	0	558	42	7	9	40	1.66
3054--4588	180	8.6	180	76	8	1166	40	7	9	41	1.67
4668--4743	32	2.4	31	78	12	73	44	0	1	53	1.08
4695--4757	26	2.4	25	84	12	74	46	0	3	50	1.17
4845--4908	17	3.8	16	75	17	67	53	3	1	42	1.26
5667--6383	177	4.0	176	74	10	505	39	8	10	42	1.69
7137--7185	13	3.8	13	73	10	55	48	2	4	44	1.33
8081--8117	19	1.9	19	88	0	56	40	13	10	35	1.80
9313--9354	19	2.2	20	86	4	59	52	0	2	45	1.13
9335--9421	19	4.6	19	75	13	65	47	0	2	50	1.13
9360--9461	16	6.6	16	69	16	56	48	0	0	50	1.07
9508--9581	30	2.4	30	82	10	80	44	2	2	50	1.30
9663--9709	24	1.9	25	86	4	69	53	0	2	44	1.12
9554--9794	19	12.3	19	66	24	51	48	1	2	48	1.23
9772--9809	14	2.5	15	83	12	51	52	2	0	44	1.14
9989--10032	22	2.0	24	86	13	67	50	2	0	47	1.13
10004--10055	16	3.2	16	81	10	61	53	0	0	46	1.00
10281--10311	15	2.1	15	94	5	55	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10322--10366	23	2.0	21	83	8	54	46	0	2	51	1.13
10336--10374	18	2.2	18	81	4	53	41	0	5	53	1.23
10749--10782	16	2.1	17	88	5	52	44	2	0	52	1.16
10799--10851	16	3.3	17	80	17	60	49	0	1	49	1.12
11099--11620	181	2.9	181	85	4	637	42	9	8	39	1.67
11942--11972	15	2.0	16	93	6	55	38	0	0	61	0.96
12179--12231	19	2.6	19	79	8	52	54	3	0	41	1.18
12216--12255	19	2.1	19	86	9	55	47	0	0	52	1.00
12783--12823	10	4.2	10	79	17	50	41	4	0	53	1.22
12790--12827	19	2.0	20	89	5	60	42	2	0	55	1.14
13086--13155	22	3.2	21	76	13	61	55	4	2	37	1.34
13102--13161	21	2.8	20	75	14	57	60	5	1	33	1.29
13385--13433	13	3.6	14	77	17	50	48	0	2	48	1.12
13486--13548	19	3.2	18	77	18	56	50	0	1	47	1.10
13481--13566	21	4.2	21	72	18	67	52	0	1	46	1.08
13481--13599	18	6.2	18	69	26	68	52	0	0	46	1.06
14603--14650	25	1.9	25	86	0	69	50	0	2	47	1.12
14954--15049	47	2.1	48	80	5	108	54	5	2	38	1.35
15020--15044	13	1.9	13	100	0	50	64	0	0	36	0.94
15543--15585	19	2.2	20	91	4	70	46	4	0	48	1.22
15747--15799	26	2.0	25	82	13	63	49	1	0	49	1.12
15885--15938	27	2.1	25	82	6	63	40	3	1	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16289--16333	22	2.0	22	86	0	63	55	0	0	44	0.99
16293--16369	28	2.7	27	72	9	73	49	0	0	50	1.00
16359--16397	18	2.1	19	85	9	53	61	0	0	38	0.96
16566--16625	26	2.3	27	80	8	70	46	1	0	51	1.10
17597--17659	16	4.0	16	78	17	62	52	0	3	44	1.17
17597--17659	32	2.0	31	87	9	92	52	0	3	44	1.17
18047--18109	25	2.6	23	80	14	56	41	1	1	55	1.19
18100--18139	16	2.6	16	80	4	55	40	5	0	55	1.22
18245--18333	29	3.1	27	75	12	81	56	2	1	40	1.19
18281--18344	19	3.5	19	67	16	55	50	1	1	46	1.20
18755--18800	15	2.8	16	84	15	58	50	0	2	47	1.13
18844--18885	22	1.9	22	85	9	59	42	0	0	57	0.99
18846--18930	12	6.6	13	72	17	54	47	0	1	51	1.08
18873--18933	22	2.8	21	83	11	70	49	0	1	49	1.10
18854--18940	22	3.5	25	73	25	69	48	1	1	49	1.16
18898--18951	19	2.8	20	75	8	58	51	1	1	44	1.22
19035--19085	25	2.0	26	81	11	61	49	3	1	45	1.32
19213--19276	22	2.7	23	79	13	69	43	1	1	53	1.19
21580--21627	14	3.6	13	78	13	53	77	0	14	8	0.99
22413--22833	63	6.7	63	81	4	458	34	10	27	28	1.90
22413--22833	125	3.4	125	81	5	501	34	10	27	28	1.90
22429--22863	188	2.3	188	84	2	552	34	10	27	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23194--23386	21	8.8	21	78	10	181	40	7	13	37	1.73
23192--23391	67	3.0	66	88	2	283	41	7	13	37	1.73
23420--23553	43	3.0	43	71	15	128	35	15	17	31	1.91
23802--23891	43	2.2	40	82	11	110	23	16	17	42	1.89
24136--24193	12	4.9	11	81	8	62	17	5	3	74	1.15
24136--24193	6	9.7	6	83	7	55	17	5	3	74	1.15
25173--25330	16	10.1	16	64	15	55	48	2	1	47	1.26
25263--25301	18	2.1	18	86	13	53	48	2	0	48	1.15
25273--25334	31	2.0	31	87	3	90	56	3	0	40	1.15
25817--26032	55	3.9	57	79	10	223	24	12	8	55	1.64
25817--26033	114	1.9	110	87	5	319	24	11	8	55	1.63
26557--26605	25	2.0	25	83	0	62	53	4	0	42	1.20
26593--26635	19	2.3	19	100	0	86	53	0	4	41	1.21
26600--26730	19	6.7	20	72	19	80	48	0	2	48	1.19
26849--26929	22	3.7	23	77	19	84	53	0	0	46	1.00
27308--27365	21	2.8	20	78	14	57	44	0	3	51	1.18
27391--27431	14	2.9	14	89	10	66	53	0	0	46	1.00
28879--28903	13	1.9	13	100	0	50	48	0	0	52	1.00
29803--29842	6	6.7	6	82	0	53	45	2	2	50	1.28
32003--32051	14	3.8	13	80	19	59	46	0	0	53	1.00
32068--32121	21	2.6	20	75	18	56	53	3	0	42	1.18
32082--32143	16	4.0	16	74	18	51	53	3	0	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32636--32694	9	6.4	9	74	16	50	50	0	0	49	1.00
32634--32737	19	5.2	20	72	21	76	49	1	0	49	1.12
32732--32792	25	2.4	25	83	2	68	44	1	3	50	1.28
33317--33490	55	3.1	54	75	16	174	55	7	12	24	1.62
33314--33530	111	1.9	112	85	6	296	54	8	11	25	1.64
33314--33484	59	3.0	57	83	9	215	56	7	12	24	1.61
34046--34085	20	2.1	19	86	13	55	45	0	2	52	1.14
35719--35858	43	3.1	42	71	17	122	33	14	15	37	1.87
35955--36066	21	5.2	21	75	12	111	40	11	7	41	1.69
35955--36066	44	2.6	42	80	13	138	40	11	7	41	1.69
36426--36834	63	6.5	63	81	4	434	27	26	10	34	1.90
36426--36838	125	3.3	127	81	5	491	27	26	10	35	1.90
36384--36834	188	2.4	189	83	3	561	28	27	10	34	1.89
37606--37657	27	1.9	27	84	7	70	3	15	0	80	0.85
39962--40015	22	2.3	22	84	9	63	51	1	1	44	1.22
40139--40199	30	2.1	29	84	3	77	49	1	3	45	1.28
40279--40332	19	2.8	20	75	8	58	44	1	1	51	1.22
40296--40372	28	2.8	28	73	11	77	49	1	0	49	1.09
40303--40385	22	3.7	22	80	17	91	51	1	0	46	1.08
40304--40376	12	6.1	13	72	18	68	50	1	0	47	1.09
40426--40475	15	3.1	15	83	16	57	48	2	0	50	1.12
40433--40479	19	2.5	20	80	19	57	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40433--40491	16	3.6	16	75	15	50	50	1	0	47	1.11
41130--41192	25	2.5	25	80	14	60	55	1	1	41	1.19
41581--41642	16	3.9	16	81	12	74	43	3	0	53	1.17
41581--41643	32	2.0	31	87	9	92	44	3	0	52	1.17
42462--42529	26	2.7	24	75	6	64	48	0	5	45	1.26
43307--43452	70	2.1	69	81	10	163	47	1	2	49	1.21
43627--43669	19	2.2	20	91	4	70	48	0	4	46	1.22
43711--43768	28	2.1	28	83	6	73	48	0	0	51	1.00
43918--43959	17	2.5	17	76	11	50	45	0	4	50	1.23
44568--44615	25	1.9	25	86	0	69	47	2	0	50	1.12

Tables:   1   2