genome.fa.s5.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167830.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87221

Tables:   1   2   

This is table  2  of  2  ( 237 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45646--45716	18	3.9	18	76	22	60	47	0	0	52	1.00
45648--45742	37	2.7	38	81	15	89	47	1	0	51	1.07
45660--45732	21	3.4	22	77	9	71	47	1	0	50	1.09
45684--45746	18	3.2	18	76	22	56	47	1	0	50	1.10
45799--45847	13	3.6	14	77	17	50	48	2	0	48	1.12
46071--46130	21	2.8	20	75	14	57	33	1	5	60	1.29
46405--46442	19	2.0	20	89	5	60	55	0	2	42	1.14
46409--46449	10	4.2	10	79	17	50	53	0	4	41	1.22
46977--47016	19	2.1	19	86	9	55	52	0	0	47	1.00
46983--47054	19	3.6	19	74	12	56	44	0	2	52	1.15
47260--47290	15	2.0	16	93	6	55	61	0	0	38	0.96
47570--48133	181	3.1	179	83	5	658	40	8	9	41	1.68
48378--48430	16	3.3	16	78	21	58	49	1	0	49	1.12
48447--48480	16	2.1	17	88	5	52	52	0	2	44	1.16
48860--48904	23	2.0	22	83	8	56	51	2	0	46	1.13
48915--48945	15	2.1	15	94	5	55	45	0	0	54	0.99
49176--49210	9	4.0	9	85	7	54	42	0	0	57	0.99
49170--49220	16	3.2	16	83	8	68	47	0	0	52	1.00
49176--49229	26	2.1	26	83	13	67	48	0	0	51	1.00
49182--49228	17	2.5	20	86	13	64	46	0	0	53	1.00
49409--49476	14	4.1	17	74	22	56	45	1	2	50	1.26
49532--49588	27	2.1	28	83	9	73	56	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49435--49623	17	11.0	17	65	24	69	50	1	1	46	1.20
49632--49680	24	2.1	22	85	7	62	46	4	0	48	1.20
49754--49802	16	3.0	16	85	8	64	48	2	0	48	1.12
49805--49885	19	4.3	19	75	16	62	50	1	0	48	1.08
49871--49896	11	2.4	11	100	0	52	46	0	0	53	1.00
49856--49914	25	2.3	26	82	5	66	45	3	1	49	1.28
50076--50136	29	2.0	29	84	9	77	50	1	0	47	1.10
51100--51136	19	1.9	19	88	0	56	35	10	13	40	1.80
51957--52004	13	3.8	13	73	15	55	45	2	2	50	1.25
52831--53470	177	3.6	180	77	7	481	42	11	7	39	1.69
53005--53339	181	1.9	176	80	5	395	42	11	8	37	1.71
53835--53880	23	2.0	23	82	4	56	47	2	4	45	1.34
54245--54574	181	1.8	178	80	7	396	41	10	7	40	1.68
55835--56172	181	1.9	182	82	1	428	43	10	6	39	1.65
56588--56647	28	2.1	28	81	9	68	50	0	0	50	1.00
57164--57203	20	2.0	20	85	9	55	50	5	0	45	1.23
57218--57273	22	2.7	20	81	8	58	53	1	1	42	1.21
57346--57389	22	2.0	22	81	0	52	52	0	4	43	1.22
57616--57672	15	3.6	16	80	19	59	57	0	3	38	1.16
57615--57697	12	7.1	12	68	20	59	55	0	2	42	1.13
57615--57697	9	9.4	9	70	17	59	55	0	2	42	1.13
57614--57698	38	2.2	39	85	8	113	54	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57648--57705	22	3.1	19	75	20	59	53	0	0	46	1.00
58711--58825	48	2.2	53	76	19	141	42	6	4	46	1.50
58726--58834	48	2.3	49	91	3	177	44	7	3	44	1.49
59957--60008	21	2.7	20	78	18	56	50	3	3	42	1.39
60133--60174	17	2.4	17	81	14	50	57	0	2	40	1.12
60213--60261	22	2.2	22	78	7	55	48	2	0	48	1.12
60314--60342	14	2.0	15	93	6	51	68	3	0	27	1.05
60576--60961	181	2.2	177	79	4	398	40	9	8	40	1.69
61961--61994	13	2.5	13	90	4	50	50	2	0	47	1.16
64097--64147	25	2.0	26	88	11	79	45	1	0	52	1.12
64108--64149	14	2.9	15	75	7	50	45	0	0	54	0.99
64219--64276	11	5.1	11	83	6	53	51	0	1	46	1.11
64097--64273	25	7.0	25	67	21	66	48	1	2	48	1.24
65192--65229	19	2.1	19	90	9	62	44	0	0	55	0.99
66114--66175	32	1.9	32	83	6	81	41	0	1	56	1.09
66225--66278	13	4.3	12	83	6	63	61	1	0	37	1.07
66225--66278	25	2.2	25	83	6	65	61	1	0	37	1.07
67165--67213	17	2.8	18	84	9	50	48	0	0	51	1.00
67165--67201	17	2.2	17	90	0	56	51	0	0	48	1.00
67326--67363	10	3.9	10	82	6	51	57	2	0	39	1.12
67578--67627	26	1.9	26	84	8	66	46	0	4	50	1.20
68058--68093	18	2.0	18	88	0	54	50	5	13	30	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69216--69255	20	1.9	22	90	10	66	47	0	0	52	1.00
69345--69410	18	3.5	18	69	17	53	48	0	3	48	1.17
69559--69615	23	2.5	22	83	5	69	52	1	1	43	1.21
69666--69730	27	2.4	27	79	16	73	55	0	3	41	1.15
69820--69881	25	2.6	23	82	15	72	48	0	1	50	1.10
69836--69880	22	2.0	21	87	12	63	48	0	2	48	1.13
70071--70104	16	2.2	15	89	5	50	61	2	2	32	1.26
70146--70208	12	4.9	13	78	7	58	46	0	3	50	1.17
70097--70279	8	22.1	8	67	22	69	49	0	3	46	1.20
70450--70485	19	1.9	19	88	5	56	38	11	8	41	1.71
70548--70625	26	3.0	25	72	10	68	48	0	3	47	1.20
70552--70601	23	2.2	23	82	10	59	46	0	4	50	1.20
71340--71422	34	2.5	32	75	11	87	56	3	0	39	1.17
71395--71428	11	3.1	11	88	12	52	64	0	0	35	0.94
71523--71560	16	2.3	17	95	4	69	39	0	5	55	1.23
72078--72131	25	2.2	24	81	12	65	40	0	0	59	0.98
72087--72149	25	2.6	25	82	2	74	42	1	1	53	1.19
72653--72734	27	2.9	29	79	15	75	51	1	1	46	1.16
74653--74696	16	2.8	16	82	6	54	56	4	0	38	1.20
74842--74886	15	2.8	16	87	12	58	48	0	0	51	1.00
75179--75234	21	2.7	21	72	2	51	44	3	0	51	1.18
75433--75498	21	3.4	18	70	25	55	51	3	1	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75960--76538	182	3.2	179	77	8	484	40	9	9	40	1.70
76272--76789	274	1.9	274	80	5	600	39	8	8	42	1.67
76534--77102	180	3.2	177	80	4	590	39	7	9	42	1.66
77035--77199	89	1.9	87	87	7	246	38	6	6	47	1.56
77119--79348	181	12.2	180	73	11	1028	40	7	10	41	1.68
77164--77998	360	2.3	360	81	7	942	42	8	9	39	1.69
78245--79349	177	6.1	181	76	7	928	39	7	10	42	1.69
79508--79567	23	2.5	24	77	15	63	58	0	0	41	0.98
79512--79565	15	3.5	15	79	18	65	59	0	0	40	0.98
79512--79578	15	4.1	16	75	19	59	56	1	1	40	1.17
80055--80102	14	3.4	14	82	2	60	47	4	0	47	1.21
80503--80600	27	3.7	27	71	22	73	43	1	3	52	1.23
81567--81609	23	1.9	22	85	4	59	37	0	4	58	1.19
81610--81687	23	3.5	23	76	16	67	43	1	0	55	1.08
81606--81698	21	4.6	21	71	24	58	45	1	1	52	1.15
82124--82165	20	2.0	22	86	9	61	45	2	2	50	1.27
82134--82185	27	1.9	27	84	7	70	50	1	0	48	1.12
82140--82211	13	5.3	13	72	22	51	43	2	1	52	1.24
83517--84113	180	3.3	180	79	4	596	40	8	10	39	1.71
84884--85055	10	16.7	10	67	17	61	44	1	2	51	1.24
86079--86132	19	2.8	19	77	11	56	53	1	3	40	1.29
86119--86177	24	2.5	24	81	13	68	49	1	1	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86103--86169	24	2.6	26	73	22	68	49	0	1	49	1.10
86615--86662	25	1.9	25	83	8	62	52	0	2	45	1.12
86733--87172	219	2.0	216	94	3	769	48	2	2	46	1.28
87049--87173	17	7.2	17	68	21	55	53	1	0	44	1.15
87132--87174	18	2.3	19	88	4	61	48	0	0	51	1.00
87123--87177	22	2.6	19	81	18	65	49	0	0	50	1.00
87129--87183	22	2.5	22	80	14	60	45	0	1	52	1.11

Tables:   1   2

The End!