genome.fa.s51.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167876.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66290

Tables:   1   2   

This is table  1  of  2  ( 139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218--289	16	4.5	16	78	14	78	55	1	0	43	1.08
345--469	14	9.4	14	69	23	58	44	0	0	53	1.11
422--476	26	2.1	26	83	12	69	45	0	0	54	0.99
385--469	40	2.0	43	84	10	115	43	0	1	55	1.07
407--483	30	2.6	28	75	13	75	46	0	0	53	1.00
434--483	26	1.9	26	84	8	66	46	0	0	54	1.00
1118--1214	20	4.8	20	68	24	60	48	2	3	46	1.29
1277--1331	22	2.5	24	77	17	64	50	0	1	47	1.11
1275--1340	29	2.4	28	79	18	75	53	0	1	45	1.09
1689--2005	168	1.9	167	81	8	385	43	10	8	37	1.68
1514--2151	349	1.8	348	81	6	790	42	11	7	38	1.69
1834--2372	181	3.0	180	79	6	540	41	10	8	40	1.69
1364--2372	180	5.7	181	74	9	711	41	10	8	39	1.70
2790--3377	180	3.2	180	75	6	477	42	10	8	38	1.70
3374--5636	181	12.6	180	74	8	1608	41	9	8	40	1.68
3505--5523	714	2.8	712	78	7	1657	42	9	8	40	1.67
3374--5636	358	6.3	361	76	7	1815	41	9	8	40	1.68
5025--5636	179	3.4	179	80	6	638	40	9	8	41	1.69
5205--6092	452	2.0	452	82	4	1105	39	8	9	42	1.68
5641--7477	181	10.2	180	75	8	1251	41	9	8	40	1.68
4994--6270	633	2.0	634	93	0	2218	40	9	8	41	1.68
5650--7274	538	3.0	542	77	9	1337	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5641--7108	719	2.0	720	79	6	1612	40	9	8	40	1.69
5707--7477	719	2.5	715	78	7	1528	41	9	8	41	1.67
15473--16623	181	6.4	181	77	4	957	40	9	8	41	1.69
16658--16739	42	2.0	42	97	2	157	56	2	7	34	1.40
16696--17293	181	3.3	179	79	7	642	43	9	6	39	1.64
17953--18000	18	2.7	18	84	12	64	41	10	2	45	1.50
17308--18476	181	6.6	179	75	7	961	42	10	7	40	1.67
17336--18535	361	3.4	351	77	8	1076	41	10	7	40	1.68
18772--18819	22	2.2	22	88	0	69	41	2	0	56	1.11
18811--18856	18	2.5	19	75	6	51	45	0	2	52	1.13
19747--20178	182	2.4	179	77	3	436	41	9	7	41	1.65
22200--22246	20	2.6	18	76	10	51	42	0	0	57	0.98
22303--22375	19	3.7	19	74	15	69	57	0	0	42	0.98
22497--22529	12	2.6	13	85	4	50	45	0	0	54	0.99
23147--23195	22	2.3	21	82	3	62	48	2	0	48	1.12
23292--23373	20	3.8	22	73	15	73	48	2	0	48	1.14
23333--23378	22	2.0	22	88	12	67	45	0	0	54	0.99
23308--23380	27	2.7	26	81	14	69	47	1	0	50	1.09
23501--23549	12	4.2	12	84	10	57	44	0	2	53	1.12
23936--23986	14	3.6	14	74	12	50	47	0	1	50	1.12
25423--25447	13	1.9	13	100	0	50	52	0	8	40	1.31
25582--25634	17	3.1	17	76	7	54	43	0	1	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25577--25632	22	2.6	23	86	8	73	42	0	1	55	1.10
26678--26742	31	2.1	31	85	5	87	43	0	4	52	1.22
26696--26743	13	3.5	13	80	8	51	47	0	2	50	1.12
28678--28721	22	2.0	22	95	0	79	31	11	13	43	1.80
29283--29356	25	3.0	25	88	3	107	54	8	17	20	1.68
30720--30788	18	3.7	18	72	14	59	46	0	4	49	1.21
30877--30940	24	2.7	25	84	13	75	53	0	0	46	1.00
30895--30940	22	2.0	22	87	8	65	56	0	0	43	0.99
31031--31080	10	4.9	10	80	9	57	40	2	2	56	1.22
31354--32836	555	2.7	554	78	11	1285	40	8	8	42	1.66
31079--32833	181	9.6	181	74	11	1162	40	7	9	42	1.65
32281--32336	18	3.2	17	73	21	53	50	5	8	35	1.57
31168--32820	359	4.5	361	75	9	1180	40	7	9	42	1.66
33079--33113	14	2.6	14	90	4	54	5	14	0	80	0.89
34352--34481	65	2.0	66	86	8	185	42	6	15	35	1.74
34447--35044	181	3.3	182	77	6	508	41	7	9	41	1.66
34558--35044	181	2.7	183	79	5	510	41	6	9	42	1.64
35406--36458	177	5.8	180	74	10	800	42	9	7	40	1.66
37001--37042	17	2.4	18	84	8	59	35	0	2	61	1.09
37631--37663	18	1.9	17	88	11	50	48	6	6	39	1.53
37422--40134	181	15.1	181	75	6	1899	41	8	9	41	1.67
39176--39216	20	2.0	20	86	9	57	53	0	4	41	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40151--40197	18	2.7	18	80	12	62	40	10	4	44	1.59
40521--40553	18	1.9	17	88	11	50	39	12	6	42	1.67
40156--40792	181	3.5	178	78	4	600	37	11	9	41	1.73
40871--41160	147	2.0	147	81	2	341	43	11	8	36	1.71
41018--42181	181	6.5	178	77	6	983	41	10	7	39	1.69
41446--41498	24	2.2	25	74	12	58	52	1	1	43	1.23
41019--42159	356	3.2	356	76	8	924	41	10	7	39	1.69
42152--42221	36	2.0	35	94	2	122	47	7	1	44	1.39
42261--42933	170	3.8	177	77	6	455	40	9	8	42	1.67
43814--43849	10	3.5	10	92	3	54	47	0	2	50	1.15
43892--43959	16	4.1	16	71	17	57	45	1	1	51	1.19
44271--44319	18	2.5	20	77	19	57	40	4	0	55	1.19
44513--44588	29	2.6	29	77	10	75	44	1	6	47	1.37
44575--44617	23	1.9	23	90	4	70	48	2	0	48	1.14
44919--45551	181	3.5	177	81	6	666	41	8	10	40	1.69
45563--47059	181	8.4	180	75	8	1079	40	8	10	41	1.69
45872--47062	177	6.7	174	75	7	595	40	8	10	40	1.70
46080--47089	540	1.9	534	80	5	1209	39	8	11	40	1.71
46960--47247	158	1.9	155	82	6	368	37	10	10	42	1.72
47395--47831	180	2.5	176	79	8	463	38	6	10	44	1.66
47566--47891	176	1.8	179	82	7	423	38	7	11	42	1.68
48264--48328	22	3.0	22	69	13	53	50	3	1	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48266--48407	58	2.4	57	78	11	137	48	2	2	47	1.25
48460--48517	17	3.4	17	70	21	50	50	0	0	50	1.00
48465--48514	26	1.9	26	84	15	68	48	0	0	52	1.00
48458--48538	13	5.6	13	72	22	56	51	0	0	48	1.00
48462--48531	22	3.2	22	69	16	56	51	0	0	48	1.00
48642--48748	56	1.9	56	83	14	141	49	0	1	47	1.18
48631--48780	6	24.5	6	67	22	64	50	2	1	46	1.21
49124--49153	14	2.1	15	93	6	53	40	0	0	60	0.97
49606--49660	26	2.2	24	81	15	58	49	3	1	45	1.30
50247--50286	14	2.9	14	89	10	57	47	0	2	50	1.14
50741--50814	25	3.0	25	85	12	93	52	2	0	44	1.15
51076--51119	20	2.3	19	80	4	52	54	2	0	43	1.12
51457--51508	15	3.5	15	81	2	61	44	0	0	55	0.99
51502--51551	14	3.6	14	76	15	50	50	0	0	50	1.00
51513--51568	19	3.1	19	73	14	55	51	0	0	48	1.00
51472--51550	28	3.1	27	72	20	82	44	0	0	55	0.99
51531--51569	15	2.5	15	83	4	51	48	0	0	51	1.00
51545--51574	12	2.4	13	94	5	53	50	0	0	50	1.00
51453--51575	51	2.5	47	73	11	113	47	0	0	52	1.00
52541--52579	19	2.0	20	85	5	53	53	0	0	46	1.00
52640--52687	22	2.2	22	82	17	64	35	0	8	56	1.30
52645--52705	20	3.0	21	81	13	65	39	1	6	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53255--53304	19	2.7	19	80	20	61	54	2	0	44	1.11
53295--53338	19	2.3	19	80	7	54	54	4	0	40	1.21
54141--54190	24	2.0	25	84	3	66	48	2	2	48	1.24
54411--54440	15	2.1	15	93	6	53	60	0	0	40	0.97
55055--55133	24	3.4	24	75	20	71	50	0	0	49	1.00
55044--55100	14	3.5	17	75	22	59	49	1	0	49	1.11
55050--55123	21	3.5	20	80	10	76	51	0	0	48	1.00
55081--55162	32	2.5	32	84	2	92	47	0	2	50	1.14
55090--55162	32	2.2	33	85	2	94	47	0	2	49	1.15
55260--55364	22	4.6	22	67	21	56	46	1	2	48	1.27

Tables:   1   2