genome.fa.s534.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168359.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_58, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144159

Tables:   1   2   3   4   

This is table  1  of  4  ( 431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68--92	10	2.5	10	100	0	50	60	0	8	32	1.26
296--362	23	2.8	24	78	13	59	52	0	2	44	1.16
510--550	18	2.2	19	95	4	75	53	2	0	43	1.13
535--625	23	4.0	23	77	15	91	46	0	2	51	1.13
551--601	16	3.1	16	75	24	52	41	0	1	56	1.10
549--602	20	3.0	19	82	17	71	42	0	1	55	1.10
713--1379	180	3.8	174	77	5	558	41	9	7	40	1.66
1487--1543	21	2.8	20	76	15	53	47	3	0	49	1.18
2282--2694	179	2.3	176	78	10	435	40	10	7	41	1.68
3680--4198	177	2.9	178	77	9	507	38	7	11	42	1.68
4670--4737	27	2.4	28	73	11	68	58	4	1	35	1.27
4672--4738	26	2.6	27	72	13	68	58	4	1	35	1.28
5773--5844	28	2.6	27	81	14	85	47	0	2	50	1.15
6701--6784	29	2.7	31	74	18	86	54	0	1	44	1.07
7250--7284	14	2.5	15	86	13	56	51	0	0	48	1.00
7294--7338	18	2.3	21	85	14	69	48	0	2	48	1.13
7769--7817	21	2.4	20	80	12	55	51	4	0	44	1.20
8437--8485	18	2.7	19	75	12	66	42	4	6	46	1.47
8610--8678	27	2.5	27	75	17	70	57	4	1	36	1.27
8669--8718	23	2.1	25	85	7	68	52	0	2	46	1.12
9001--9103	33	3.2	32	75	15	97	52	0	0	46	1.07
9037--9124	13	5.9	14	72	22	56	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9451--10430	180	5.5	180	75	7	692	41	9	8	40	1.68
10441--10914	181	2.6	178	79	8	471	41	7	7	42	1.61
17997--18053	16	3.6	16	78	19	57	45	3	1	49	1.29
18350--18400	12	4.2	12	77	22	54	43	0	0	56	0.99
18350--18406	26	2.3	26	82	17	68	43	0	0	56	0.99
18332--18419	30	2.8	33	76	10	94	45	2	0	52	1.13
18415--18448	15	2.3	15	89	0	50	38	5	0	55	1.24
18534--18573	19	2.0	20	85	4	55	47	0	0	52	1.00
18516--18741	23	9.7	23	66	21	71	47	1	1	50	1.18
18532--18587	27	2.1	27	86	6	78	50	0	0	50	1.00
18543--18600	26	2.2	26	82	11	66	46	1	0	51	1.11
18690--18739	17	2.9	18	82	14	52	50	0	0	50	1.00
18732--18818	33	2.6	36	75	15	87	50	1	2	45	1.21
18989--19340	181	1.9	179	80	7	408	39	7	9	43	1.66
19347--19407	29	2.1	30	96	3	115	60	16	3	19	1.49
19480--19552	17	4.4	17	70	10	53	49	2	2	45	1.31
19650--19701	12	4.2	12	85	4	59	38	1	3	55	1.29
20568--20602	13	2.8	12	87	8	52	42	0	8	48	1.33
20637--20684	15	3.0	15	73	26	53	56	0	6	37	1.25
20957--21004	14	3.5	15	86	13	68	47	0	0	52	1.00
21166--21211	21	2.1	22	84	4	58	58	0	2	39	1.10
21413--21459	13	3.5	13	76	21	51	34	2	6	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21457--21527	36	2.0	34	84	10	90	54	1	2	40	1.23
21802--21877	17	4.3	18	75	15	70	52	5	1	40	1.32
22036--22084	21	2.4	21	79	3	55	53	0	2	44	1.12
23884--23932	13	3.6	14	77	17	50	48	0	2	48	1.12
24121--24181	17	3.3	19	80	19	67	39	4	0	55	1.21
24880--24930	23	2.2	23	82	6	59	41	1	0	56	1.10
24890--24934	11	3.9	11	82	8	54	40	0	0	60	0.97
25057--25107	24	2.1	24	89	7	77	49	0	3	47	1.20
25061--25107	14	3.4	14	85	5	60	48	0	4	46	1.21
25346--25394	16	3.0	16	82	11	64	53	2	0	44	1.12
25365--25408	11	3.7	11	77	16	52	47	0	0	52	1.00
25724--25762	19	2.1	18	90	4	60	43	0	0	56	0.99
26100--26141	22	1.9	22	85	9	59	52	2	0	45	1.13
26114--26155	15	2.9	15	85	3	59	52	2	0	45	1.13
26507--26531	13	1.9	13	100	0	50	56	0	4	40	1.18
28479--28540	23	2.8	22	78	7	63	41	1	3	53	1.27
28790--28832	13	3.4	13	80	6	52	51	2	0	46	1.13
29221--29261	14	2.9	14	96	3	73	46	0	4	48	1.23
29268--29332	13	4.8	13	72	14	51	47	0	1	50	1.10
29470--29512	20	2.1	21	82	4	52	62	0	2	34	1.08
29972--30065	25	3.8	25	76	14	70	53	5	0	41	1.24
30055--30088	18	1.9	17	88	5	50	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30367--30429	29	2.2	27	81	10	72	50	1	0	47	1.10
30388--30440	22	2.5	21	80	17	56	56	1	0	41	1.10
30422--30451	16	1.9	15	93	6	51	53	6	0	40	1.27
30470--30494	12	2.1	12	100	0	50	48	0	0	52	1.00
31144--31200	29	1.9	30	83	16	75	56	5	1	36	1.32
32126--32254	41	3.2	41	84	2	170	20	11	20	46	1.82
32676--32726	25	2.0	25	85	7	68	50	0	0	49	1.00
32931--32983	27	2.1	24	82	10	61	56	5	1	35	1.34
36081--36132	21	2.4	23	81	12	65	46	1	0	51	1.12
36586--36630	24	2.0	22	83	16	56	57	2	2	37	1.23
36649--36680	13	2.5	13	94	0	55	43	6	0	50	1.27
36883--36993	33	3.5	32	78	15	99	49	4	0	45	1.22
36978--37045	14	4.9	15	72	27	53	48	0	0	51	1.00
37214--37249	15	2.2	17	90	9	58	47	2	0	50	1.15
37246--37317	13	6.0	12	70	13	51	50	1	0	48	1.09
37257--37325	24	2.8	26	76	12	74	49	1	0	49	1.09
37804--37845	23	1.9	21	90	9	66	50	4	4	40	1.45
37999--38027	14	2.0	15	93	6	51	27	0	3	68	1.05
38036--38091	19	3.1	19	77	7	64	53	1	3	41	1.29
38465--39036	182	3.2	178	80	5	503	38	6	10	43	1.66
39082--39110	9	3.3	9	95	4	51	58	0	0	41	0.98
39493--39533	19	2.2	19	86	0	55	46	0	4	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39646--39715	3	22.3	3	73	13	52	41	0	2	55	1.14
39646--39691	16	2.9	16	90	0	65	43	0	0	56	0.99
39651--39715	19	3.4	20	74	18	59	40	0	3	56	1.15
39765--39839	25	2.9	25	76	7	71	50	2	1	45	1.24
40008--40057	13	4.0	12	76	23	50	58	0	0	42	0.98
40022--40052	15	2.0	16	93	6	55	61	0	0	38	0.96
40251--40291	16	2.7	15	76	23	50	46	0	0	53	1.00
40301--40337	16	2.2	18	85	9	51	54	2	2	40	1.29
40399--40450	22	2.2	25	83	10	74	55	0	0	44	0.99
40405--40500	8	11.8	8	70	17	56	51	0	0	48	1.00
40399--40443	17	2.6	17	82	6	56	55	0	0	44	0.99
40433--40488	21	2.7	21	83	8	71	51	0	0	48	1.00
40481--40543	21	2.9	21	80	4	72	46	6	3	44	1.45
40526--40571	17	2.8	16	78	15	58	52	0	4	43	1.21
40757--40821	20	3.4	20	72	12	55	44	3	1	50	1.26
40773--40825	17	2.8	20	72	16	58	45	1	1	50	1.23
40951--41111	13	11.7	13	66	23	55	40	1	1	56	1.18
41025--41102	35	2.3	35	78	13	90	42	2	1	53	1.22
41280--41348	26	2.6	26	75	6	68	56	1	1	40	1.17
41338--41374	17	2.2	17	90	0	56	62	0	5	32	1.18
41557--41826	142	1.9	142	81	4	330	43	8	7	40	1.63
41715--42029	173	1.8	175	84	5	433	40	9	7	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42379--42424	6	7.7	6	84	15	60	47	0	0	52	1.00
42388--42469	20	4.0	20	75	10	76	45	1	1	52	1.16
42383--42436	26	2.2	26	80	12	69	44	1	0	53	1.11
42389--42478	29	3.2	27	77	14	76	45	2	2	50	1.26
42670--42729	30	2.0	30	87	6	86	48	1	1	48	1.21
43348--43418	26	2.7	26	74	12	74	47	0	1	50	1.09
44213--44255	22	2.0	22	86	9	61	46	0	2	51	1.13
45509--45582	12	6.3	12	71	12	64	50	0	1	48	1.09
45504--45609	9	12.0	9	68	24	66	50	1	1	46	1.23
45537--45643	12	8.6	12	68	15	65	47	0	1	49	1.18

Tables:   1   2   3   4