genome.fa.s534.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168359.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_58, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144159

Tables:   1   2   3   4   

This is table  3  of  4  ( 431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79957--80051	48	2.0	48	80	12	106	49	4	1	45	1.28
80062--80115	25	2.2	23	81	18	65	40	0	3	55	1.17
81346--81385	19	2.2	18	86	13	55	55	0	0	45	0.99
82086--82132	23	2.1	22	88	11	69	48	2	0	48	1.13
82431--82468	18	2.0	20	85	10	53	57	2	10	28	1.45
82310--82865	177	3.1	179	75	7	495	40	7	9	42	1.66
83103--83145	14	3.2	13	83	9	52	58	0	0	41	0.98
83435--83483	23	2.2	22	82	10	55	55	2	4	38	1.31
83732--83799	26	2.7	24	75	9	64	44	8	1	45	1.44
83921--83992	37	1.9	37	82	2	90	47	2	1	48	1.25
84587--84635	24	2.0	24	84	7	64	38	2	2	57	1.22
84679--84735	26	2.1	28	78	12	66	47	8	0	43	1.34
84686--84741	26	2.2	26	81	9	71	48	8	0	42	1.34
84728--85702	181	5.5	177	75	10	742	40	7	10	42	1.68
86215--86285	6	12.3	6	74	15	53	47	2	0	49	1.16
86221--86286	22	3.0	21	82	8	78	45	3	0	51	1.16
89154--89185	14	2.2	15	94	5	57	53	0	0	46	1.00
89261--89310	26	1.9	26	88	8	75	42	0	4	54	1.19
90070--90117	22	2.2	21	79	13	53	47	6	0	45	1.27
90076--90121	22	2.1	22	84	8	58	47	4	0	47	1.21
90084--90206	22	5.6	22	67	22	62	51	2	0	45	1.20
90190--90245	29	1.9	30	85	7	80	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91304--91397	4	23.2	4	73	18	52	44	1	1	53	1.14
91349--91409	22	2.8	21	85	14	72	47	0	3	49	1.18
91434--91500	30	2.3	30	79	7	75	43	2	2	50	1.32
91478--91549	10	6.7	11	75	19	55	55	1	1	41	1.17
91478--91559	18	4.6	18	66	21	55	53	2	1	42	1.21
91539--91580	18	2.3	19	80	19	54	47	2	0	50	1.14
91642--91698	17	3.3	17	69	11	53	49	3	3	43	1.36
91648--91719	35	1.9	35	86	10	99	48	4	2	44	1.36
91714--91743	15	2.0	15	93	0	51	40	0	3	56	1.16
91760--91788	14	2.1	14	93	6	51	41	0	0	58	0.98
91798--91824	14	1.9	14	100	0	54	66	3	0	29	1.09
92665--92708	11	3.7	11	77	16	52	52	0	0	47	1.00
92679--92727	16	3.0	16	82	11	64	44	0	2	53	1.12
92815--92857	19	2.3	18	81	18	52	55	2	0	41	1.12
92791--92855	34	1.9	34	84	6	87	50	3	1	44	1.26
93822--93886	17	3.3	21	72	27	54	53	0	4	41	1.21
93841--93881	17	2.4	16	92	8	64	53	0	4	41	1.22
93928--93993	21	3.0	22	75	6	71	51	0	0	48	1.00
93922--94024	17	5.7	18	72	20	63	48	0	0	51	1.00
94688--94762	20	3.5	20	73	16	69	38	1	1	58	1.15
94688--94766	17	4.9	17	72	23	64	39	1	1	58	1.14
96553--97808	181	7.0	178	75	8	952	41	10	7	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96614--97733	530	2.1	534	79	6	1173	42	10	7	39	1.68
98248--98283	15	2.5	14	86	8	54	55	0	0	44	0.99
98384--98417	16	2.1	16	89	10	52	41	0	0	58	0.98
98427--98473	20	2.3	21	82	10	62	51	0	0	48	1.00
98430--98484	16	3.4	16	77	7	58	50	1	0	47	1.11
98713--99024	166	1.9	167	79	10	361	41	9	7	41	1.66
100016--100063	14	3.4	14	80	11	53	45	0	2	52	1.12
100014--100071	17	3.4	17	79	11	64	46	0	1	51	1.11
100133--100162	13	2.2	14	94	5	53	30	0	6	63	1.20
100475--100505	15	2.1	15	93	0	53	48	6	3	41	1.45
100681--100745	21	3.1	21	70	14	53	36	1	6	55	1.34
101292--101329	20	1.9	19	85	15	51	63	0	0	36	0.95
101475--101533	25	2.3	27	82	14	79	45	1	0	52	1.10
101820--102898	180	6.0	179	77	7	935	41	8	9	40	1.70
101821--102898	361	3.0	354	79	6	1104	41	8	9	40	1.70
101820--102892	541	2.0	533	80	5	1185	41	8	9	39	1.70
102898--102937	21	1.9	21	90	10	64	50	5	0	45	1.23
103539--103573	10	3.6	10	88	7	54	42	0	0	57	0.99
103545--103667	27	4.7	26	70	17	76	44	1	2	51	1.24
103620--103662	19	2.2	19	84	12	52	51	0	0	48	1.00
103630--103670	20	2.0	20	90	9	66	48	2	0	48	1.14
103752--103805	18	3.4	17	73	26	55	51	0	1	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103991--104024	12	2.8	12	90	4	50	47	0	0	52	1.00
104203--104240	14	2.7	14	80	15	51	57	0	0	42	0.98
104333--104373	20	2.2	18	91	8	64	43	2	0	53	1.13
104341--104426	20	4.3	19	77	20	61	45	1	1	52	1.16
104388--104426	17	2.3	17	86	8	53	51	0	0	48	1.00
104620--104654	10	3.2	11	88	12	54	42	2	0	54	1.15
104633--104685	25	2.1	25	82	6	63	47	0	0	52	1.00
105217--105242	13	2.0	13	100	0	52	53	7	0	38	1.30
105332--105370	17	2.3	16	83	12	51	56	2	2	38	1.27
105403--105454	16	3.2	17	81	10	65	48	3	0	48	1.20
105507--105534	14	2.0	14	100	0	56	50	0	7	42	1.30
105928--105974	20	2.4	19	80	16	51	42	2	2	53	1.25
106317--106362	13	3.5	14	80	14	53	43	0	2	54	1.12
106516--106563	14	3.5	14	75	13	55	52	0	0	47	1.00
106517--106565	22	2.2	22	78	7	55	51	0	0	48	1.00
106873--106913	20	2.1	19	90	4	64	43	0	2	53	1.13
108261--108362	23	4.4	23	68	21	70	50	0	0	49	1.07
108286--108327	20	2.2	18	91	8	66	57	2	0	40	1.12
108323--108356	7	4.9	7	89	10	52	44	0	0	55	0.99
108338--108378	19	2.2	18	91	4	64	43	0	2	53	1.13
108497--108526	15	1.9	16	93	6	53	53	0	0	46	1.00
108502--108553	19	2.8	18	77	11	52	51	0	1	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108912--108979	25	2.7	26	78	13	72	41	2	1	54	1.24
108912--108975	24	2.6	26	80	11	73	40	3	1	54	1.25
108960--109004	17	2.5	18	82	10	56	48	2	0	48	1.13
108951--109031	26	3.0	26	72	26	69	50	2	0	46	1.14
109146--109829	182	3.8	178	74	7	587	42	10	9	38	1.71
110132--110176	17	2.5	19	76	23	53	48	4	0	46	1.22
110283--110315	13	2.4	14	85	10	50	45	3	3	48	1.33
110476--110514	18	2.2	18	85	0	51	43	0	2	53	1.14
112025--112065	21	2.0	21	100	0	82	39	2	0	58	1.11
112049--112106	13	4.5	13	77	14	59	46	0	0	53	1.00
112449--112478	12	2.4	12	94	5	51	43	0	0	56	0.99
113354--113425	25	2.8	27	79	8	89	51	0	1	47	1.09
113368--113415	16	2.9	16	81	12	62	45	0	2	52	1.12
113365--113422	18	3.4	18	75	17	54	50	0	1	48	1.11
114446--114498	17	3.1	16	82	15	54	54	0	0	45	0.99
114692--114731	21	1.9	21	85	10	55	55	7	2	35	1.42
114972--115012	20	2.0	20	85	0	55	51	0	0	48	1.00
115897--115943	20	2.5	19	86	10	69	44	2	0	53	1.12
115890--115946	20	2.8	20	79	12	62	43	3	0	52	1.18
115897--116041	13	12.1	13	68	19	59	49	0	1	48	1.14
116058--116104	18	2.4	20	79	10	53	46	0	2	51	1.13
116370--116411	22	2.0	21	85	4	57	50	0	2	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116394--116475	19	4.2	19	67	24	55	48	0	3	47	1.19
116595--116669	30	2.3	33	74	17	77	45	1	1	52	1.17
116623--116676	28	1.9	28	85	7	74	46	1	1	50	1.23
117064--117103	15	2.6	16	84	15	57	45	2	0	52	1.14
117323--117377	8	7.0	8	80	12	51	47	0	3	49	1.19
117509--117543	17	2.2	17	90	10	56	45	0	2	51	1.16
117488--117552	23	2.8	23	69	17	62	46	1	1	50	1.20
117639--117739	8	12.2	8	74	20	77	52	1	0	44	1.19
117625--117727	16	6.2	16	75	17	95	51	0	1	45	1.19
117790--117850	12	5.0	13	75	20	53	44	1	0	54	1.10

Tables:   1   2   3   4