genome.fa.s534.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168359.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_58, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144159

Tables:   1   2   3   4   

This is table  2  of  4  ( 431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45537--45643	26	3.7	27	73	21	67	47	0	1	49	1.18
45927--45991	25	2.6	26	76	14	73	47	0	1	50	1.10
45923--45982	12	4.8	13	75	18	56	48	0	1	50	1.11
46219--46251	15	2.1	16	88	5	50	54	0	0	45	0.99
46300--46347	15	3.3	15	85	5	64	60	0	0	39	0.97
46300--46357	13	4.3	13	82	8	55	58	1	0	39	1.08
46582--46635	21	2.6	20	76	5	54	50	1	0	48	1.11
47024--47062	19	2.1	18	90	4	60	43	0	0	56	0.99
47027--47080	19	2.7	19	77	13	56	46	0	1	51	1.11
47542--47568	14	1.9	14	100	0	54	29	0	3	66	1.09
47714--47764	14	3.6	14	80	19	61	41	0	0	58	0.98
47763--47812	18	2.7	19	77	20	61	48	2	4	46	1.32
47875--47910	11	3.4	11	92	3	56	44	0	0	55	0.99
47976--48050	4	18.5	4	70	26	52	49	2	0	48	1.15
47995--48052	22	2.7	21	84	15	66	50	3	0	46	1.18
48055--48095	21	2.0	21	90	0	64	63	0	2	34	1.08
49489--49525	10	3.5	11	85	10	51	51	0	0	48	1.00
49504--49551	18	2.7	18	84	9	55	47	0	4	47	1.21
49847--49879	13	2.4	14	85	10	50	48	3	3	45	1.33
50321--50963	182	3.6	181	75	8	443	38	8	9	43	1.67
51396--51435	19	2.0	20	90	4	64	42	0	5	52	1.23
51758--51791	12	2.9	11	91	8	50	38	2	5	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51914--52390	180	2.6	180	76	2	465	41	9	8	40	1.68
52455--52505	24	2.1	25	85	3	68	49	1	1	47	1.24
52492--52522	12	2.5	12	94	5	53	45	0	0	54	0.99
54128--54156	14	2.0	15	93	6	51	27	0	3	68	1.05
54201--54256	22	2.5	22	82	8	69	44	3	0	51	1.18
54292--54356	24	2.7	24	79	9	69	46	3	0	50	1.17
54964--55003	15	2.6	16	84	15	57	45	2	0	52	1.14
55094--55176	22	3.8	20	79	17	87	48	3	0	48	1.19
55216--55286	13	5.4	13	76	15	74	47	1	2	47	1.25
55421--55455	17	2.2	17	90	10	56	45	0	2	51	1.16
55400--55464	23	2.8	23	69	17	62	46	1	1	50	1.20
55569--55634	24	2.7	25	73	19	68	54	1	0	43	1.09
55537--55634	16	6.0	16	75	16	85	51	1	2	45	1.19
55686--55745	21	2.5	23	76	20	61	41	1	0	56	1.09
55908--55957	20	2.6	18	79	17	55	50	6	2	42	1.38
56061--56125	20	3.4	20	79	8	64	46	3	0	50	1.17
56090--56125	17	2.1	17	89	0	54	44	2	0	52	1.15
56257--56303	22	2.1	22	84	7	60	48	2	0	48	1.13
57609--57638	11	2.9	10	90	9	51	40	0	0	60	0.97
57609--57648	21	1.9	21	89	0	62	45	0	0	55	0.99
60204--60250	20	2.2	20	85	14	60	44	0	2	53	1.12
60289--60364	37	2.1	34	83	9	89	47	1	1	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60298--60350	22	2.4	23	81	9	65	45	1	0	52	1.11
60457--60494	14	2.7	14	84	11	51	55	0	2	42	1.14
60447--60495	20	2.5	20	76	6	55	55	0	2	42	1.11
60523--60563	16	2.5	17	80	15	50	58	2	0	39	1.11
60720--60814	43	2.2	42	77	15	97	47	4	2	46	1.33
60752--60825	21	3.5	21	69	16	55	45	4	1	48	1.29
60810--60887	12	7.3	11	70	23	51	41	1	2	55	1.22
60843--60893	22	2.4	22	83	9	61	45	0	3	50	1.20
61057--61093	15	2.5	15	90	0	56	54	2	2	40	1.29
62203--62265	25	2.4	27	86	7	85	46	1	1	50	1.20
62505--62578	8	9.5	8	72	21	50	54	1	2	41	1.23
63181--63505	177	1.8	176	85	4	458	42	7	10	40	1.66
64044--64681	180	3.5	180	78	4	518	39	8	9	41	1.69
64218--64562	181	1.9	180	81	1	404	39	6	11	42	1.67
65258--65308	26	2.0	25	81	11	59	41	3	3	50	1.39
66128--66599	163	2.8	163	81	7	454	43	9	6	40	1.63
66692--66726	13	2.7	13	81	0	52	54	0	0	45	0.99
67291--67324	6	5.8	6	89	3	52	50	2	0	47	1.16
67613--67671	25	2.3	25	82	8	75	54	0	1	44	1.10
67593--67665	9	8.1	9	72	18	55	52	0	1	46	1.09
68110--68200	19	4.8	19	73	23	61	51	1	0	47	1.07
68134--68194	22	2.7	22	82	2	68	52	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68397--68466	24	2.8	25	85	6	90	54	1	7	37	1.37
68419--68529	6	19.2	6	72	20	69	49	1	2	45	1.26
68557--68644	29	2.8	32	79	17	105	53	2	2	42	1.26
68562--68644	20	4.2	19	70	19	62	54	1	2	42	1.21
68827--68889	14	4.4	14	75	16	58	47	0	0	52	1.00
68817--68884	29	2.4	28	83	7	84	45	0	0	54	0.99
68830--68884	29	1.9	29	88	3	85	47	0	0	52	1.00
68991--69072	10	8.5	10	72	22	61	50	1	0	48	1.08
68988--69047	16	3.9	16	86	6	79	50	0	0	50	1.00
68991--69071	16	4.9	16	75	20	62	50	1	0	48	1.08
69282--69323	16	2.6	16	85	14	59	45	4	0	50	1.23
69596--69656	19	3.4	18	79	18	58	44	0	1	54	1.10
69782--69818	20	2.0	20	85	15	53	54	0	2	43	1.14
69959--70004	18	2.5	19	79	10	51	39	2	0	58	1.10
69978--70051	18	4.3	18	72	14	57	44	2	0	52	1.15
69991--70020	15	1.9	16	93	6	53	46	0	0	53	1.00
70034--70745	183	4.0	177	77	6	483	38	7	11	42	1.70
71208--71841	179	3.5	177	76	6	537	41	8	9	39	1.69
71527--72142	323	1.9	326	82	5	773	41	8	9	41	1.67
72322--72363	23	1.9	21	90	9	66	50	4	4	40	1.45
72352--72422	33	2.1	34	82	7	83	56	0	0	43	0.99
72348--72417	26	2.8	25	76	17	74	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72951--73524	179	3.2	176	79	8	539	38	6	10	43	1.66
74123--74170	9	5.2	9	78	12	53	43	0	0	56	0.99
74127--74170	12	3.6	12	81	6	52	43	0	0	56	0.99
74505--74536	16	2.0	17	88	11	50	59	0	0	40	0.97
74878--74973	17	5.9	17	68	20	55	52	0	0	47	1.00
74912--74967	21	2.7	21	83	8	71	51	0	0	48	1.00
75002--75048	17	2.9	16	84	9	69	48	0	4	46	1.21
75078--75141	20	3.2	19	71	20	51	48	6	1	43	1.37
75235--75299	20	3.4	20	72	12	55	44	3	1	50	1.26
75251--75303	17	2.8	20	72	16	58	45	1	1	50	1.23
75425--75585	13	11.8	13	65	23	57	42	2	0	55	1.13
75425--75584	40	4.3	39	69	22	94	42	2	0	55	1.13
75482--75625	26	5.1	26	71	22	71	46	2	0	50	1.15
75498--75563	19	3.7	18	76	9	64	45	1	0	53	1.09
75419--75613	26	8.4	23	67	21	56	44	3	0	52	1.16
75705--75794	46	1.9	47	82	6	112	54	2	0	43	1.12
75963--76252	142	2.0	142	79	6	311	45	9	6	38	1.63
75994--76252	142	1.8	142	80	5	319	44	9	7	38	1.65
76795--76886	10	8.2	10	79	17	53	46	0	2	51	1.13
76804--76853	6	8.5	6	83	16	61	46	0	0	54	1.00
76795--76859	26	2.5	26	73	16	62	46	0	1	52	1.10
76813--76893	20	4.0	20	75	13	76	45	0	1	53	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77117--77226	47	2.4	48	80	13	124	51	2	0	45	1.15
77315--77372	10	5.6	10	76	13	55	48	1	1	48	1.22
77767--77813	24	1.9	25	87	12	71	48	4	2	44	1.34
77782--77831	21	2.4	21	79	0	55	48	2	0	50	1.12
78677--78720	23	1.9	23	86	9	63	45	0	2	52	1.13
78685--78732	16	2.9	17	82	17	57	45	0	0	54	0.99
79957--80042	25	3.5	22	75	19	66	48	3	1	46	1.26
79964--80038	12	6.4	12	69	15	59	49	1	1	48	1.18
79964--80030	9	7.9	9	70	17	54	49	1	1	47	1.19
79965--80079	26	4.5	25	73	16	94	49	1	1	46	1.22

Tables:   1   2   3   4