genome.fa.s634.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168459.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_67, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134467

Tables:   1   2   3   4   

This is table  2  of  4  ( 436 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39071--39140	20	3.7	20	75	9	65	51	0	1	47	1.09
39059--39148	37	2.4	37	80	9	94	54	0	2	43	1.12
39104--39150	24	2.0	24	83	8	60	57	0	0	42	0.98
39244--39297	21	2.8	19	76	20	58	44	3	3	48	1.38
39359--39403	17	2.7	18	83	10	60	44	4	0	51	1.21
39395--39449	21	2.6	21	88	2	74	45	1	5	47	1.36
39501--39546	17	2.7	18	83	10	60	45	0	0	54	0.99
39494--39545	22	2.2	25	83	10	74	44	0	0	55	0.99
39593--39641	13	3.6	14	77	17	50	48	2	0	48	1.12
39625--39685	29	2.0	30	87	6	88	49	0	3	47	1.18
39765--39799	18	1.9	18	88	0	52	42	2	2	51	1.31
40103--40146	19	2.2	20	84	11	56	56	2	4	36	1.32
40090--40151	23	2.5	24	75	17	65	53	1	3	41	1.27
40138--40179	21	2.0	20	86	13	57	42	0	0	57	0.99
40757--40789	18	1.9	17	88	11	50	39	12	6	42	1.67
40581--41031	181	2.5	181	81	5	484	37	12	9	41	1.75
41079--41434	181	2.0	181	85	1	480	42	11	7	38	1.68
40762--41336	301	1.9	300	83	2	733	38	12	7	41	1.72
41478--41503	5	5.2	5	100	0	52	38	0	0	61	0.96
43603--43665	15	4.3	15	74	15	51	41	3	1	53	1.26
43634--43705	18	4.2	17	74	15	60	47	1	1	50	1.18
43652--43698	22	2.0	24	88	8	71	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44018--44056	19	2.1	18	90	4	60	43	0	0	56	0.99
44021--44074	19	2.7	19	77	13	56	48	1	0	50	1.11
44424--44489	18	3.6	18	76	13	62	48	0	1	50	1.10
44923--44959	12	3.2	12	82	17	51	45	0	0	54	1.00
45229--45298	19	3.8	17	72	22	61	47	0	4	48	1.21
45259--45310	24	2.2	24	85	0	68	48	0	1	50	1.12
45270--45318	24	2.1	24	84	3	64	46	2	0	51	1.12
45341--45387	15	3.1	15	77	20	53	53	0	0	46	1.00
45471--45509	19	2.1	18	90	4	60	53	5	5	35	1.45
45745--45787	15	2.8	16	82	7	52	46	0	0	53	1.00
46076--46118	12	3.1	14	83	12	54	51	0	0	48	1.00
46084--46119	12	3.2	12	88	11	58	55	0	0	44	0.99
46072--46129	22	2.8	21	74	25	68	50	0	0	50	1.00
46596--46735	70	2.0	70	91	0	226	56	5	10	27	1.55
47264--47523	21	11.7	22	77	11	212	39	10	14	35	1.80
47256--47531	46	6.1	46	83	5	266	39	9	14	36	1.79
48358--48391	18	1.9	17	88	5	50	79	2	14	2	0.97
49171--49395	122	1.9	121	81	8	271	52	9	15	22	1.71
50120--50200	26	3.1	26	77	15	78	48	1	1	49	1.17
50129--50224	23	4.7	21	71	21	55	51	2	1	45	1.20
50440--50473	14	2.2	16	90	10	54	41	0	0	58	0.98
51145--51177	12	2.6	13	90	4	50	33	6	3	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51609--51650	8	5.1	8	81	16	50	47	4	0	47	1.23
51743--51796	21	2.5	22	76	11	58	42	5	1	50	1.36
51823--51860	18	2.1	19	85	14	53	47	0	7	44	1.32
52458--52506	20	2.5	19	81	12	55	46	0	4	48	1.20
52914--52959	23	2.0	23	83	8	58	41	4	6	47	1.49
53071--53109	20	2.0	20	89	0	60	51	2	0	46	1.14
53212--53251	9	4.2	10	78	21	50	50	0	0	50	1.00
53714--53754	21	2.0	21	85	9	57	41	0	0	58	0.98
53976--54053	12	6.2	12	72	22	54	43	1	1	53	1.16
53959--54075	27	4.4	28	68	20	63	45	0	2	51	1.21
54224--54268	22	2.0	22	87	8	65	51	6	0	42	1.28
54878--54912	16	2.3	15	90	5	52	37	2	2	57	1.29
55154--55196	13	3.5	12	81	12	52	51	2	0	46	1.13
55152--55202	24	2.2	23	89	10	77	49	1	0	49	1.12
55152--55202	11	4.4	11	79	16	50	49	1	0	49	1.12
55152--55239	26	3.4	27	77	22	75	47	1	1	50	1.16
55215--55257	23	2.0	21	81	9	50	46	4	4	44	1.45
56166--56340	77	2.3	77	96	2	318	41	7	8	42	1.62
57510--57939	181	2.4	179	78	4	425	40	7	9	42	1.66
59463--59518	9	6.8	8	74	13	51	50	1	0	48	1.11
59469--59516	16	2.9	16	81	12	62	52	2	0	45	1.12
59487--59530	11	3.7	11	77	16	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60720--60800	41	2.0	40	88	7	119	46	0	1	51	1.08
60765--60799	17	2.1	17	94	0	61	48	0	0	51	1.00
61013--61070	10	5.0	12	75	19	52	48	1	1	48	1.22
61070--61140	19	3.8	17	75	15	61	49	0	4	46	1.21
61443--61527	19	4.9	17	71	22	70	48	0	4	47	1.23
61489--61534	19	2.4	19	92	0	74	47	0	4	47	1.21
61563--61671	33	3.3	33	72	21	102	49	1	1	46	1.23
61653--61684	13	2.5	13	94	0	55	40	0	0	59	0.97
61656--61711	19	2.8	20	78	10	60	42	1	1	53	1.21
62532--62559	14	2.0	14	100	0	56	57	0	0	42	0.99
62565--62620	27	2.0	28	82	3	69	48	1	0	50	1.11
62809--62837	14	2.0	15	93	6	51	68	3	0	27	1.05
64083--64112	11	2.8	11	95	5	53	53	0	0	46	1.00
64085--64133	18	2.5	19	77	12	55	53	0	0	46	1.00
64337--64394	14	4.6	12	78	18	64	82	0	17	0	0.66
64337--64394	6	9.2	6	78	17	64	82	0	17	0	0.66
64338--64394	26	2.2	26	81	3	71	82	0	17	0	0.67
64345--64396	8	6.6	8	78	8	54	84	0	15	0	0.62
64337--64397	31	2.0	31	93	0	104	83	0	16	0	0.64
65173--65479	63	4.9	64	76	5	270	34	11	25	28	1.90
65203--65438	125	1.9	125	84	5	316	35	11	25	27	1.91
65874--66015	46	3.1	46	87	1	196	42	9	14	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65882--66000	21	5.3	21	67	15	76	41	9	15	34	1.79
65910--65987	25	3.3	25	75	14	92	39	11	12	35	1.80
66292--66436	77	1.9	76	80	8	168	66	4	11	17	1.38
66535--66588	20	2.7	21	77	8	58	75	3	9	11	1.15
66700--66732	15	2.1	16	94	5	59	72	0	9	18	1.10
66820--66917	7	13.6	7	73	12	56	78	4	5	12	1.05
66787--66841	19	2.9	19	76	10	60	78	3	7	10	1.08
66857--66930	34	2.2	33	87	4	103	74	1	6	17	1.11
66795--66930	35	3.9	34	73	12	107	75	3	5	14	1.13
67221--67285	17	3.8	17	82	13	64	66	1	12	20	1.32
67357--67391	15	2.3	15	90	0	52	77	5	8	8	1.13
67459--67499	15	2.7	15	88	0	64	82	0	7	9	0.83
67459--67562	15	6.9	14	70	15	57	77	3	5	12	1.07
67536--67577	15	2.7	16	88	3	59	76	0	9	14	1.02
67459--67578	15	7.4	16	69	18	54	76	3	6	13	1.11
68080--68117	20	1.9	20	88	0	58	68	5	2	23	1.23
68413--68451	16	2.3	18	87	12	57	71	7	7	12	1.29
68608--68655	6	8.0	6	82	13	55	20	0	2	77	0.88
68608--68652	22	2.0	23	95	4	83	22	0	2	75	0.91
68610--68654	17	2.6	16	82	10	54	20	0	2	77	0.87
68667--68697	11	2.7	11	95	5	53	25	0	3	70	1.02
68754--68881	22	6.3	21	71	17	85	25	4	2	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68808--68881	21	3.5	21	72	15	64	21	5	2	70	1.20
68869--68922	19	2.8	18	81	15	56	12	5	7	74	1.21
68883--68922	19	2.1	19	95	0	71	10	7	10	72	1.28
69211--69263	26	2.0	26	88	0	79	30	3	13	52	1.57
69781--69891	5	21.6	5	70	17	52	14	5	4	75	1.14
69824--69861	17	2.2	18	90	4	60	10	5	5	78	1.06
69924--70618	59	11.7	58	78	12	596	42	8	13	35	1.75
69928--70619	119	5.8	117	83	7	724	42	8	13	35	1.75
70259--70361	32	3.2	32	63	15	84	44	10	13	31	1.78
69927--70612	303	2.3	300	87	5	980	42	8	13	35	1.75

Tables:   1   2   3   4