genome.fa.s643.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168468.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_68, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134064

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107898--109376	181	8.3	179	76	9	1095	40	7	10	41	1.67
107944--109376	361	4.0	359	77	6	1276	40	7	10	41	1.67
109799--109832	16	2.1	16	88	0	50	76	0	14	8	1.01
109891--110100	57	3.7	54	84	9	251	36	13	6	43	1.71
110133--110166	5	6.4	5	87	12	50	76	0	5	17	0.98
110177--110210	10	3.4	10	88	12	52	67	0	0	32	0.91
110177--110206	13	2.3	13	94	0	51	66	0	0	33	0.92
110952--110977	6	4.3	6	100	0	52	84	0	0	15	0.62
110987--111047	21	2.8	22	80	11	81	63	1	6	27	1.28
111008--111056	17	2.8	17	81	6	53	67	0	4	28	1.09
111029--111083	3	17.7	3	77	7	56	60	5	1	32	1.30
111261--111298	17	2.2	17	86	13	51	0	5	7	86	0.69
111316--111743	41	10.2	41	78	9	285	39	22	15	23	1.91
111363--111731	84	4.4	85	78	9	319	39	22	15	23	1.92
111313--111675	85	4.3	84	79	9	274	39	22	15	22	1.91
111316--111731	128	3.3	126	76	9	387	39	22	15	22	1.91
117026--119484	180	13.7	178	73	11	1299	39	9	10	41	1.70
117025--119453	181	13.5	181	75	6	1773	39	8	10	41	1.70
117031--119270	538	4.2	534	76	8	1414	39	8	10	40	1.71
117025--119484	361	6.9	357	74	9	1737	39	9	10	41	1.70
121169--124888	180	20.7	179	71	11	1862	40	8	9	42	1.68
121169--124888	181	20.7	180	73	10	2213	40	8	9	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122214--122251	18	2.2	17	86	9	51	47	2	7	42	1.46
121169--123686	711	3.5	716	75	11	1585	40	7	9	41	1.67
120672--124764	531	7.6	532	73	12	2002	39	8	9	42	1.68
123292--123327	18	2.1	18	90	10	58	44	2	13	38	1.59
122402--123804	728	1.9	723	78	7	1511	40	7	9	42	1.67
124732--125029	155	1.9	155	82	2	366	37	9	9	43	1.69
130759--130812	23	2.2	25	80	6	67	22	11	18	48	1.79
130841--130913	38	1.9	38	97	0	137	30	9	30	30	1.89

Tables:   1   2

The End!