genome.fa.s650.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168475.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_74, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125787

Tables:   1   2   

This is table  2  of  2  ( 212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72999--73023	13	1.9	13	100	0	50	40	24	28	8	1.83
73547--73579	11	3.0	11	100	0	66	18	36	27	18	1.94
74737--74788	26	2.0	26	88	0	77	28	19	25	26	1.98
75115--75167	26	2.0	26	89	7	81	32	20	20	26	1.98
76132--76184	26	2.1	25	86	13	74	28	22	20	28	1.99
76165--76525	158	2.3	158	78	6	381	25	30	24	19	1.98
76639--76694	26	2.2	26	90	6	87	28	17	25	28	1.98
76730--76754	13	1.9	13	100	0	50	24	16	48	12	1.79
76797--76824	12	2.3	12	100	0	56	7	32	28	32	1.84
77016--77068	26	2.0	26	85	0	70	30	15	24	30	1.95
78264--78316	26	2.0	26	89	7	81	28	18	20	32	1.97
78656--78707	26	2.0	26	92	7	88	32	17	23	26	1.96
78262--78816	196	2.8	194	83	2	716	26	26	24	22	2.00
79158--79210	26	2.0	26	89	7	81	24	16	28	30	1.97
80275--80326	26	2.0	26	92	7	88	32	13	23	30	1.93
79881--80435	196	2.8	196	83	2	720	26	26	24	22	2.00
80774--80826	26	2.0	26	89	7	81	24	16	28	30	1.97
81499--81550	26	2.0	26	96	0	95	28	19	23	28	1.98
81525--82027	159	3.2	157	77	6	496	24	30	26	18	1.98
82003--82053	26	2.0	26	92	0	84	29	19	27	23	1.98
82639--82671	11	3.0	11	95	0	57	12	27	36	24	1.91
82628--82671	22	2.0	22	81	0	52	15	29	31	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83420--83868	159	2.8	156	74	6	411	23	29	28	18	1.98
85324--85376	26	2.0	26	88	0	79	26	18	24	30	1.98
86251--86625	159	2.4	159	82	2	441	22	30	28	18	1.97
87353--87405	26	2.0	26	92	7	90	28	20	24	26	1.99
87379--87880	158	3.2	154	77	8	481	23	28	27	20	1.99
87854--87906	26	2.0	26	92	0	88	24	18	28	28	1.98
88586--89023	159	2.8	159	80	4	474	25	29	26	18	1.98
89048--89100	26	2.0	26	92	7	90	26	20	26	26	1.99
89915--89967	26	2.0	26	96	0	97	24	20	28	26	1.99
89440--90846	670	2.1	675	81	6	1614	23	28	26	20	1.99
90585--90637	26	2.0	26	92	0	88	26	20	26	26	1.99
91897--91975	26	3.0	26	94	0	131	32	20	24	22	1.97
92422--92471	26	1.9	26	91	0	82	26	20	28	26	1.99
93139--93191	26	2.0	26	92	0	88	26	20	26	26	1.99
93165--94751	548	2.9	540	83	4	1874	24	28	25	21	1.99
94613--94665	26	2.0	26	85	7	72	30	18	24	26	1.98
94638--95102	158	2.9	157	74	9	372	24	30	25	19	1.98
95993--96280	159	1.8	158	82	6	368	26	28	25	20	1.99
96313--96367	26	2.1	27	89	3	85	30	20	27	21	1.98
96691--96743	26	2.0	26	89	7	81	30	20	22	26	1.98
97122--97199	41	1.9	41	89	0	120	12	39	23	24	1.89
97208--97260	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97975--98299	158	2.1	158	81	4	370	24	28	26	20	1.99
98281--98333	26	2.0	26	88	0	79	26	16	28	28	1.97
98501--98936	158	2.8	157	86	2	570	25	30	24	19	1.98
99148--99200	26	2.0	26	88	0	79	26	18	28	26	1.98
99868--99920	26	2.0	26	89	7	81	28	22	24	24	2.00
100364--100416	26	2.0	26	92	0	88	26	18	28	26	1.98
100743--100794	26	2.0	26	88	7	79	28	17	21	32	1.96
101643--101695	26	2.0	26	85	7	72	28	18	24	28	1.98
102120--102172	26	2.0	26	92	0	88	22	18	28	30	1.98
102489--102544	26	2.2	26	86	0	76	30	19	17	32	1.95
102989--103067	26	3.0	26	87	3	106	27	15	25	31	1.95
103773--104264	158	3.1	157	74	8	404	24	30	26	18	1.98
104238--104290	26	2.0	26	89	7	81	26	20	26	26	1.99
103985--104674	355	1.9	353	85	3	940	24	30	26	18	1.98
104624--105068	159	2.8	158	75	6	423	23	29	26	19	1.98
106656--107096	159	2.7	159	77	7	379	24	30	25	19	1.98
106803--107321	159	3.3	155	76	7	406	24	30	25	20	1.99
107302--107354	26	2.0	26	89	7	81	28	16	24	30	1.97
107987--108039	26	2.0	26	86	13	74	28	13	24	33	1.93
108012--108439	159	2.7	159	80	3	468	23	30	28	18	1.97
108508--109167	159	4.2	159	77	4	573	23	29	26	20	1.99
107985--108934	495	1.9	494	81	4	1135	23	29	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109141--109193	26	2.0	26	92	0	88	26	20	26	26	1.99
109872--109924	26	2.0	26	89	7	81	30	22	20	26	1.98
110065--110358	159	1.9	158	80	2	347	22	31	28	18	1.97
110052--112009	498	3.8	500	74	10	1307	23	30	26	19	1.98
110398--110896	158	3.2	155	75	7	470	22	30	27	19	1.98
110870--110922	26	2.0	26	88	0	79	26	22	22	28	1.99
111565--111946	157	2.4	158	76	4	369	22	31	25	20	1.98
111920--111972	26	2.0	26	89	7	81	28	20	24	26	1.99
112289--112341	26	2.0	26	85	7	72	30	18	22	28	1.98
112484--112536	26	2.0	26	89	7	81	28	18	24	28	1.98
118288--118601	159	2.0	157	81	3	371	21	32	28	18	1.97
118668--118717	26	1.9	26	87	0	73	28	20	26	26	1.99
121056--121106	26	2.0	26	88	7	77	33	17	19	29	1.95
121252--121304	26	2.0	26	92	0	88	26	16	26	30	1.97
120856--121413	196	2.8	195	81	3	582	24	25	25	23	2.00
121411--122134	159	4.8	146	74	11	424	24	28	28	18	1.98
121384--122167	304	2.6	304	81	4	907	23	29	28	18	1.98
121861--122194	159	2.1	157	78	5	348	23	29	27	19	1.98
122963--123462	158	3.2	157	71	9	442	25	28	26	20	1.99
123804--123856	26	2.0	26	89	7	81	30	20	22	26	1.98
123645--124060	184	2.2	191	82	8	485	24	29	25	20	1.99
124000--124052	26	2.0	26	89	7	81	30	22	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124496--124548	26	2.0	26	89	7	81	28	20	24	26	1.99
124876--124928	26	2.0	26	92	7	90	28	20	24	26	1.99
125377--125429	26	2.0	26	85	7	72	26	16	26	30	1.97
123829--125688	881	2.1	875	80	4	2116	24	28	26	20	1.99

Tables:   1   2

The End!