genome.fa.s654.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168479.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_78, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117733

Tables:   1   2   3   

This is table  2  of  3  ( 308 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39510--39553	17	2.5	16	80	20	52	47	0	2	50	1.13
39696--39756	17	3.4	18	80	8	63	49	1	1	47	1.21
40462--40494	13	2.4	14	90	10	50	42	6	0	51	1.26
40818--40856	17	2.2	18	90	4	62	48	0	2	48	1.15
40773--40865	17	5.4	17	68	22	50	48	1	2	48	1.20
41492--41549	26	2.2	27	81	9	66	18	3	3	74	1.11
41548--41627	21	3.9	21	76	15	85	28	5	5	61	1.38
41540--41654	42	2.7	42	81	9	119	27	5	4	62	1.36
42437--42492	20	3.0	20	82	12	66	32	0	3	64	1.11
42596--42685	46	2.0	44	86	4	126	38	12	8	40	1.74
42642--42823	57	3.2	54	80	9	195	43	9	12	34	1.75
43430--43462	17	1.9	17	93	0	57	39	3	3	54	1.31
43664--43706	15	2.8	16	86	6	54	55	0	0	44	0.99
43732--43788	23	2.5	22	80	8	69	47	1	0	50	1.11
43796--43843	24	2.0	24	87	0	69	50	8	0	41	1.33
45201--45454	135	1.9	134	85	2	357	46	7	7	38	1.61
46020--46449	180	2.4	179	82	3	488	40	10	7	41	1.68
46521--46553	15	2.1	16	88	5	50	45	0	0	54	0.99
47112--47144	12	2.6	13	90	4	50	33	6	3	57	1.38
47666--47745	41	1.9	42	82	12	103	45	3	2	48	1.33
47771--47807	14	2.6	14	91	8	58	64	0	0	35	0.94
49180--49204	8	3.1	8	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49264--49293	15	2.0	15	93	0	51	63	0	0	36	0.95
49276--49320	18	2.5	18	78	7	56	51	0	2	46	1.13
49417--49468	11	4.5	11	75	17	52	51	1	0	46	1.12
49419--49497	35	2.3	35	85	10	103	51	2	0	45	1.14
50055--50094	21	1.9	21	85	10	55	47	0	0	52	1.00
50244--50322	31	2.4	34	76	20	87	43	0	5	51	1.23
50809--50860	15	3.4	16	84	12	65	46	1	1	50	1.23
51167--51220	23	2.3	23	83	3	63	38	1	3	55	1.28
52025--52092	20	3.2	20	73	19	57	50	1	1	47	1.19
52018--52077	23	2.9	21	85	9	70	48	3	0	48	1.18
53845--53930	33	2.6	32	77	18	88	48	2	2	46	1.27
54114--54169	27	2.1	27	83	12	71	50	0	0	50	1.00
54114--54164	25	2.0	26	88	3	77	50	0	0	49	1.00
54160--54190	12	2.7	12	95	5	55	41	0	6	51	1.27
54219--54284	28	2.4	28	78	12	66	50	1	0	48	1.10
54275--54367	16	5.5	17	67	20	52	52	0	1	46	1.07
54747--54789	14	2.9	15	81	18	54	44	0	0	55	0.99
54747--54789	11	4.2	10	82	14	52	44	0	0	55	0.99
54776--54857	31	2.7	32	74	11	82	48	1	1	48	1.17
54944--55179	117	2.0	118	96	0	438	38	5	7	47	1.55
55201--55250	8	6.4	8	84	11	68	48	0	0	52	1.00
54949--55210	117	2.3	115	88	5	350	41	6	6	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55203--55253	24	2.1	24	92	7	86	45	0	0	54	0.99
55204--55264	24	2.8	23	83	14	76	47	0	0	52	1.00
55212--55264	6	8.7	6	78	12	54	47	0	0	52	1.00
55204--55259	16	3.7	15	78	21	64	46	0	0	53	1.00
55371--55411	22	1.9	21	90	5	64	56	2	2	39	1.26
55368--55420	22	2.4	21	82	14	63	56	1	1	39	1.21
56221--57391	181	6.5	181	79	5	1018	41	9	8	40	1.69
56221--57392	539	2.2	538	81	4	1315	41	9	8	40	1.68
56221--57437	357	3.4	356	78	7	1167	41	9	8	40	1.68
57548--57585	19	2.0	20	89	5	60	31	0	5	63	1.17
57606--58168	178	3.2	178	78	7	518	39	7	10	42	1.67
58451--58489	11	3.5	11	86	6	51	38	2	0	58	1.12
60148--60216	35	2.0	35	83	11	88	47	1	1	49	1.19
60508--60577	32	2.2	33	87	12	101	60	0	1	38	1.06
60491--60588	28	3.4	29	78	14	98	55	1	1	42	1.13
60539--60587	25	1.9	26	87	4	73	53	0	2	44	1.12
60659--60700	22	1.9	22	90	9	68	50	2	4	42	1.36
60953--60991	18	2.1	19	95	4	71	43	2	0	53	1.14
60961--61000	18	2.2	18	86	0	53	52	0	0	47	1.00
61045--61113	16	4.3	16	77	15	63	40	0	2	56	1.14
61053--61124	23	2.9	25	72	19	69	43	0	2	54	1.15
61057--61171	42	2.6	44	81	14	121	44	0	4	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61249--61293	18	2.5	17	82	10	54	48	0	2	48	1.13
61316--61378	23	2.7	23	83	13	69	53	0	3	42	1.16
61324--61396	11	6.1	11	70	26	51	57	0	1	41	1.07
61372--61421	26	1.9	27	84	15	70	60	6	0	34	1.21
62045--62091	21	2.2	22	88	3	69	38	4	2	55	1.31
62378--62432	15	3.8	15	76	11	53	56	0	1	41	1.10
63278--63324	15	3.5	14	83	13	55	55	0	0	44	0.99
63268--63349	35	2.4	33	84	10	94	53	1	1	43	1.16
63639--64109	181	2.6	178	79	5	484	41	11	7	38	1.71
64216--64278	23	2.8	23	76	21	62	53	3	1	41	1.26
64311--64362	18	3.1	17	78	15	63	48	1	1	48	1.24
64465--64516	17	3.1	17	76	10	54	53	1	0	44	1.11
64734--64819	12	7.2	12	74	18	56	46	1	2	50	1.21
64762--64786	13	1.9	13	100	0	50	56	4	0	40	1.18
65014--65064	18	2.8	18	70	21	52	54	0	7	37	1.29
65077--65136	25	2.4	24	78	15	59	51	5	1	41	1.33
65312--65356	22	2.0	22	91	0	72	46	2	0	51	1.13
65312--65366	22	2.6	21	76	21	60	47	1	1	49	1.23
66003--66138	68	2.0	68	87	4	195	33	14	6	45	1.71
66069--66237	59	2.8	61	85	6	238	33	12	5	47	1.65
68193--68227	18	1.9	18	94	0	61	14	42	8	34	1.76
68701--68760	30	2.0	31	83	9	79	48	1	3	46	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68989--69021	15	2.3	15	90	10	52	51	0	0	48	1.00
69141--69185	19	2.4	18	85	7	54	57	2	0	40	1.11
69369--69430	3	22.0	3	90	9	96	30	0	0	69	0.89
69540--69580	14	3.0	14	82	17	59	51	0	0	48	1.00
70671--70721	19	2.9	17	81	18	61	52	1	0	45	1.12
70724--70765	18	2.3	18	80	8	50	54	0	2	42	1.13
70785--70874	29	3.2	26	73	18	74	53	1	3	42	1.24
70921--70992	14	4.9	15	78	18	73	45	0	0	54	0.99
70934--70990	29	1.9	30	82	10	73	47	0	0	52	1.00
71136--71202	17	3.9	17	75	11	64	44	1	4	49	1.31
71745--71790	21	2.1	22	84	4	58	36	2	2	58	1.22
71946--71981	14	2.5	15	91	8	58	47	0	0	52	1.00
73472--73573	54	1.9	52	80	9	116	48	5	1	44	1.38
74472--74547	40	1.9	40	86	7	111	42	7	5	44	1.56
74785--74837	17	3.1	17	79	12	56	54	1	0	43	1.11
74787--74842	22	2.6	23	86	8	73	55	1	0	42	1.10
76577--76632	24	2.5	22	81	16	69	50	1	1	46	1.22
76820--76884	23	2.8	24	75	20	57	47	3	3	46	1.33
77358--77393	18	1.9	19	88	5	56	38	2	2	55	1.29
77429--77538	14	7.3	15	71	20	56	45	0	2	50	1.22
77484--77516	13	2.5	13	85	14	50	42	0	6	51	1.26
77501--77538	18	2.1	18	90	0	58	44	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77480--77562	39	2.1	40	82	8	98	44	1	4	49	1.31
77630--77715	29	3.1	28	73	20	81	44	0	4	51	1.22
77875--77925	21	2.3	20	81	15	57	50	1	0	47	1.12
78580--78614	15	2.3	15	90	9	54	40	0	5	54	1.24
78882--78931	18	2.8	18	73	8	57	54	0	0	46	1.00
79155--79575	176	2.4	177	79	9	419	41	8	10	39	1.70
80054--80836	181	4.3	180	79	5	756	40	8	9	42	1.66
80509--80557	18	2.8	18	78	15	57	42	6	12	38	1.67
80029--80880	362	2.4	362	80	5	888	40	8	9	42	1.67
80915--80967	20	2.8	18	78	16	54	45	3	0	50	1.19

Tables:   1   2   3