genome.fa.s654.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168479.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_78, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117733

Tables:   1   2   3   

This is table  3  of  3  ( 308 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81252--81317	26	2.5	27	78	11	73	45	1	1	51	1.19
81416--81466	18	2.8	18	72	21	52	52	3	1	41	1.31
81771--81818	24	2.0	24	88	8	71	43	0	6	50	1.27
81765--81878	53	2.1	52	81	13	126	47	0	4	48	1.22
81818--81882	23	2.7	24	83	11	71	50	0	1	47	1.10
81909--81951	15	2.8	16	86	6	54	44	0	0	55	0.99
82097--82145	25	2.0	25	84	8	64	36	2	6	55	1.37
82182--82225	23	1.9	23	81	9	54	40	2	2	54	1.25
82952--83048	44	2.3	41	76	13	92	47	3	1	48	1.24
83269--83328	29	2.1	28	81	12	68	46	0	3	50	1.18
83632--83682	17	3.1	17	78	21	63	49	0	0	50	1.00
83625--83673	12	4.5	11	85	10	57	48	0	0	51	1.00
84160--84201	22	2.0	20	82	17	50	54	2	2	40	1.26
84659--84706	21	2.2	22	85	3	71	56	2	4	37	1.30
84796--84828	13	2.5	13	100	0	66	51	0	15	33	1.43
84824--84851	13	2.2	13	100	0	56	39	7	14	39	1.73
85380--85428	18	2.6	19	80	6	64	40	2	4	53	1.32
85657--85742	29	3.1	28	73	20	81	44	0	4	51	1.22
85920--85967	13	3.5	13	80	5	51	52	0	0	47	1.00
87080--87577	180	2.8	179	80	6	497	40	8	9	41	1.67
88060--88469	181	2.3	177	78	5	419	40	9	7	42	1.66
88620--88652	16	2.1	16	88	11	50	63	6	0	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89808--89842	16	2.3	15	90	5	52	54	2	5	37	1.39
90212--90245	17	1.9	18	88	5	52	55	5	0	38	1.24
90441--90535	11	8.5	11	73	23	58	56	1	1	41	1.13
90426--90490	26	2.5	26	78	12	62	53	0	1	44	1.09
90441--90582	19	7.3	19	70	21	71	55	2	0	41	1.17
90472--90570	40	2.6	38	76	10	103	57	3	1	38	1.21
90506--90595	11	8.0	11	70	17	69	56	3	0	40	1.16
91778--91827	13	3.8	13	76	15	50	56	0	2	42	1.11
91606--91803	89	2.2	89	95	0	362	41	3	3	52	1.34
91941--91974	3	11.0	3	93	6	59	64	0	0	35	0.94
92174--92226	17	3.1	17	76	7	54	43	0	1	54	1.11
92169--92224	22	2.6	23	86	8	73	42	0	1	55	1.10
92974--93380	181	2.3	179	81	4	451	42	10	8	38	1.70
95217--95252	14	2.5	15	91	8	58	52	0	0	47	1.00
95966--96030	17	3.8	17	76	15	62	49	4	1	44	1.32
98378--98772	60	6.7	58	83	6	449	43	8	13	34	1.74
98378--98772	178	2.2	174	84	5	499	43	8	13	34	1.74
98705--98744	16	2.4	17	83	8	55	50	5	0	45	1.23
105614--105647	9	3.7	9	88	7	50	88	0	2	8	0.62
105622--105655	10	3.4	10	95	0	59	91	0	2	5	0.51
105614--105655	18	2.3	18	88	12	59	88	0	4	7	0.64
106666--106969	41	7.3	41	92	2	365	24	17	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106948--106994	23	2.0	23	100	0	94	25	17	25	31	1.97
106905--107028	66	1.9	66	94	0	221	24	19	24	32	1.98
107220--107312	3	32.7	3	73	18	83	23	3	0	73	0.98
107213--107318	6	18.0	6	83	11	78	21	2	0	74	1.00
107214--107312	22	4.3	23	83	8	105	22	3	0	74	0.95
108426--108823	59	6.7	57	80	9	449	44	7	12	35	1.71
108445--108824	176	2.1	178	90	4	597	44	7	12	35	1.71
109485--109520	14	2.4	15	90	9	56	52	0	0	47	1.00
109614--109672	19	3.2	19	77	18	61	45	3	0	50	1.18
110143--110177	16	2.1	18	89	10	56	45	0	5	48	1.26
110799--110844	14	3.3	15	77	22	55	47	2	0	50	1.13
110799--110846	23	2.1	23	84	7	62	47	2	0	50	1.12
110799--110863	28	2.4	26	80	14	78	47	1	1	49	1.20
111124--111174	19	2.6	19	81	9	59	41	0	1	56	1.10
111292--111324	15	2.3	15	90	10	52	48	0	0	51	1.00
113076--113116	19	2.2	19	91	4	66	53	2	0	43	1.13
113101--113164	23	2.9	22	84	11	78	45	0	1	53	1.10
113115--113163	20	2.7	19	82	17	61	42	0	2	55	1.11
113279--113764	180	2.7	179	77	5	492	42	9	8	39	1.68
114544--114620	20	3.5	21	86	13	95	44	0	2	53	1.14
115321--115351	15	2.0	16	93	6	55	45	3	6	45	1.45
115363--115397	16	2.3	15	90	5	52	37	5	2	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115532--115581	21	2.4	21	78	21	61	44	4	0	52	1.20
115649--115704	25	2.3	24	82	11	62	51	1	1	44	1.22

Tables:   1   2   3

The End!