genome.fa.s666.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168491.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_89, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101268

Tables:   1   2   3   

This is table  1  of  3  ( 244 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354--416	31	2.0	31	96	0	117	44	6	7	41	1.59
1806--1835	15	2.0	15	100	0	60	20	0	6	73	1.05
2262--2581	164	1.9	164	83	6	414	39	8	8	43	1.66
2105--3117	346	2.9	344	78	8	813	40	7	9	42	1.66
2426--6249	181	21.3	177	73	10	1240	39	8	9	42	1.68
1945--6249	362	12.1	352	71	11	1741	39	7	9	42	1.67
4729--6210	536	2.8	534	76	7	1367	40	7	9	42	1.66
6409--7371	179	5.4	177	74	11	671	39	8	8	42	1.68
7802--7852	18	2.9	18	71	14	52	49	9	3	37	1.55
7371--12571	362	14.4	358	76	7	3549	41	7	9	41	1.66
7371--12559	181	28.7	179	73	9	3013	41	7	9	41	1.66
11056--11105	18	2.8	18	67	14	50	54	8	2	36	1.42
13752--13852	27	3.6	28	71	21	88	46	1	2	48	1.28
13797--13851	25	2.2	26	83	3	67	47	0	3	49	1.19
13766--13838	18	4.1	19	70	22	61	47	1	4	46	1.30
13844--13896	21	2.7	20	75	18	56	52	1	0	45	1.11
14517--14609	12	7.7	12	65	20	50	49	1	3	46	1.25
15121--15185	22	3.0	21	76	12	69	43	0	1	55	1.09
15196--15241	14	3.3	13	82	11	56	54	2	0	43	1.12
15224--15281	18	3.3	18	75	20	59	50	1	3	44	1.29
15827--15851	13	1.9	13	100	0	50	32	4	0	64	1.12
16199--16234	15	2.5	15	90	4	56	50	5	2	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16371--16448	31	2.7	29	80	7	79	52	5	2	39	1.37
16433--16475	14	2.9	15	79	10	52	48	2	4	44	1.36
16923--17000	30	2.6	31	80	17	94	46	2	0	51	1.14
16929--17000	29	2.5	28	82	17	85	45	2	0	51	1.15
17031--17084	28	2.1	27	83	13	69	57	1	0	40	1.09
17108--17160	17	3.0	17	83	5	52	39	0	1	58	1.09
17128--17161	17	2.0	17	94	0	59	44	0	0	55	0.99
17130--17192	33	2.1	31	82	14	78	49	0	1	49	1.10
17413--17847	178	2.4	178	76	4	414	39	8	11	41	1.71
18391--18470	15	5.2	16	70	23	57	50	1	1	47	1.17
18391--18471	14	5.7	14	72	22	55	49	1	1	48	1.17
18441--18488	21	2.3	21	85	0	60	47	2	0	50	1.12
19367--19408	16	2.7	16	79	17	52	52	2	0	45	1.13
19958--20668	180	4.0	176	76	6	549	40	7	10	41	1.68
20755--20807	17	3.1	17	73	10	54	50	0	1	47	1.12
21237--22477	181	6.9	179	76	7	1068	39	8	10	41	1.70
21292--22477	364	3.3	360	78	7	1099	39	8	10	41	1.70
22499--23307	182	4.5	179	75	9	589	39	7	10	42	1.68
23454--23489	17	2.0	19	89	10	58	50	0	0	50	1.00
23748--23817	17	3.9	17	73	10	59	42	0	4	52	1.20
24075--24122	14	3.5	14	75	13	55	52	0	0	47	1.00
24076--24124	22	2.2	22	78	7	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24626--24672	22	2.3	21	89	10	71	51	2	0	46	1.13
25371--25419	22	2.1	23	88	11	73	53	2	0	44	1.12
25357--25412	17	3.4	17	73	16	55	51	0	0	48	1.00
25356--25430	31	2.5	31	79	12	84	53	1	0	45	1.08
25596--25697	20	5.7	19	67	23	62	51	0	0	48	1.00
25602--25651	14	3.6	14	76	15	50	50	0	0	50	1.00
25645--25696	15	3.5	15	76	2	52	53	0	0	46	1.00
25657--25708	20	2.6	20	81	0	59	51	1	0	46	1.12
26375--26425	24	2.1	25	85	3	68	43	1	0	54	1.11
26527--26590	28	2.3	29	80	17	73	56	0	0	43	0.99
26530--26601	27	2.9	26	80	15	73	56	0	1	41	1.07
26550--26626	10	7.5	11	65	26	53	54	1	1	42	1.16
26544--26617	25	2.9	26	82	9	73	56	1	1	40	1.16
28483--28552	25	2.7	25	82	10	70	45	2	2	48	1.32
29170--29206	19	1.9	19	88	0	56	43	0	0	56	0.99
29641--29689	24	2.0	26	84	8	66	51	8	4	36	1.51
29864--29893	4	7.2	4	92	7	51	50	0	0	50	1.00
29855--29893	17	2.2	18	90	4	62	48	0	0	51	1.00
29891--29929	21	1.9	19	85	10	51	53	7	0	38	1.30
30091--30150	12	4.8	12	74	18	52	46	1	1	50	1.21
30314--30354	19	2.2	19	86	0	55	48	4	0	46	1.23
30739--30767	9	3.3	9	95	4	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30815--31387	182	3.2	179	81	5	674	43	10	7	39	1.66
31721--32186	181	2.6	179	77	8	426	40	11	8	39	1.73
32309--32375	26	2.7	24	74	6	62	49	0	5	44	1.27
32935--33009	26	3.0	25	75	13	73	44	1	5	49	1.33
34066--34125	30	2.0	31	83	9	79	46	3	1	48	1.28
34405--34446	22	1.9	22	95	0	75	50	2	2	45	1.27
34399--34452	22	2.4	22	81	3	72	50	3	1	44	1.30
34727--34773	23	2.0	23	83	0	58	42	2	2	53	1.25
34988--35032	19	2.4	18	85	7	54	57	2	0	40	1.11
35610--35680	14	5.5	12	75	17	54	59	1	1	38	1.15
35646--35678	17	1.9	17	93	0	57	63	0	0	36	0.95
35938--35987	24	2.1	24	81	7	57	44	2	2	52	1.24
36160--36211	19	2.6	19	81	9	59	44	0	0	55	0.99
36215--36260	8	5.9	8	78	14	51	47	2	0	50	1.13
36215--36260	23	2.0	23	87	12	67	47	2	0	50	1.13
36737--36805	32	2.0	33	83	10	86	43	4	2	49	1.37
37392--37474	43	2.0	41	85	4	112	44	19	14	21	1.86
37849--38107	88	3.0	86	85	5	351	37	16	9	35	1.82
37850--38107	22	11.8	22	85	4	310	37	17	9	35	1.82
38442--38939	63	7.9	63	78	7	422	27	26	10	35	1.89
38503--38940	188	2.3	189	84	3	569	27	26	10	35	1.89
40546--40593	23	2.3	21	86	13	64	52	16	6	25	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41135--41245	33	3.4	33	77	14	97	54	0	2	41	1.20
41453--41488	17	2.1	17	94	0	63	55	0	2	41	1.14
41687--41731	17	2.7	18	83	10	60	44	4	0	51	1.21
41802--41872	17	4.4	16	71	16	58	49	0	0	50	1.00
42403--42446	19	2.2	20	84	11	56	56	2	4	36	1.32
42390--42454	23	2.6	26	75	22	75	52	3	3	41	1.32
43123--43155	18	1.9	17	88	11	50	39	12	6	42	1.67
42815--43394	181	3.2	177	79	7	535	37	10	10	41	1.73
43400--43798	181	2.2	179	82	3	478	42	11	7	38	1.70
45994--46041	16	2.9	16	75	12	53	50	2	2	45	1.25
46332--46370	19	2.1	18	85	4	51	41	2	0	56	1.13
47205--47267	24	2.6	23	78	16	65	44	0	1	53	1.10
47218--47267	12	4.5	11	76	20	50	46	0	2	52	1.12
47460--47517	10	5.0	12	75	19	52	48	1	1	48	1.22
47517--47587	19	3.8	17	75	15	61	49	0	4	46	1.21
47629--47671	15	2.9	15	80	16	54	55	0	0	44	0.99
47759--47797	19	2.1	18	90	4	60	53	5	5	35	1.45
48035--48077	15	2.8	16	82	7	52	46	0	0	53	1.00
49450--49538	25	3.6	25	92	0	151	44	13	12	29	1.80
49449--49535	12	6.9	14	67	20	57	45	13	12	27	1.80
49426--49628	22	9.0	22	74	11	110	39	11	14	33	1.82
49500--49628	44	2.9	44	82	4	143	38	9	15	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50054--50153	43	2.3	42	80	8	103	23	12	17	48	1.80
51222--51364	54	2.7	54	86	3	200	47	9	14	28	1.75
51662--51686	9	2.8	9	100	0	50	44	8	0	48	1.32
51737--51781	20	2.4	18	79	13	54	42	0	2	55	1.12
51737--51782	19	2.4	19	82	10	58	41	0	2	56	1.11
52038--52092	18	3.2	17	76	14	51	50	0	1	47	1.11
52059--52117	26	2.2	27	82	8	77	45	0	1	52	1.10
52441--52525	16	6.1	14	69	25	56	51	0	3	44	1.18
52438--52531	20	5.2	19	72	20	62	53	0	3	43	1.17
52491--52534	17	2.4	17	85	14	52	54	0	2	43	1.12

Tables:   1   2   3