genome.fa.s674.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168499.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_96, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90779

Tables:   1   2   

This is table  2  of  2  ( 209 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38911--38991	41	2.0	41	85	7	112	53	0	1	45	1.08
38932--38964	12	2.8	12	86	13	50	54	0	0	45	0.99
38932--38990	24	2.4	25	80	11	68	52	0	1	45	1.10
38917--39007	29	3.1	29	73	10	78	53	1	1	43	1.15
40193--40259	25	2.7	25	72	13	66	49	0	1	49	1.10
40205--40252	16	2.9	16	81	12	62	45	0	2	52	1.12
40202--40259	18	3.4	18	75	17	54	50	0	1	48	1.11
40343--40390	16	3.3	14	78	18	53	60	4	2	33	1.27
40298--40384	44	2.0	45	81	2	104	54	4	2	39	1.34
41495--41555	23	2.5	26	75	20	69	45	1	3	49	1.28
42302--42757	175	2.6	176	79	4	470	43	7	7	41	1.62
43014--43087	36	2.1	36	94	0	130	39	4	6	50	1.48
43393--44397	181	5.6	180	81	4	996	40	8	10	40	1.69
44547--45068	181	2.9	179	79	4	575	42	9	10	38	1.71
43846--45054	661	1.8	662	82	3	1574	41	9	10	39	1.70
45098--45651	182	3.1	179	78	10	475	43	9	7	39	1.67
45536--45832	158	1.9	157	82	6	370	41	11	7	39	1.68
45986--47767	181	9.8	178	71	11	812	41	10	8	39	1.69
46160--47371	363	3.4	358	77	7	858	42	10	8	39	1.68
47370--47414	19	2.4	19	88	0	63	35	13	6	44	1.70
48703--48744	13	3.2	13	77	16	50	35	0	4	59	1.19
48783--49899	182	6.1	181	75	9	810	40	7	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49898--49955	28	2.0	29	87	9	84	46	0	0	53	1.00
49912--49957	14	3.3	14	78	0	56	41	0	0	58	0.98
50202--50813	181	3.4	177	80	6	616	41	10	7	40	1.68
50779--50908	65	2.0	67	89	8	205	35	16	6	42	1.73
52407--53072	181	3.7	179	77	10	651	43	8	7	40	1.63
52905--52960	18	3.2	18	75	12	62	35	8	7	48	1.62
53100--53168	18	3.7	18	72	14	59	49	4	0	46	1.21
54481--55017	278	1.9	278	91	2	873	29	13	11	45	1.78
55496--55560	31	2.1	31	85	5	87	52	4	0	43	1.22
56421--56507	24	3.8	24	70	18	58	43	3	1	51	1.26
56486--56653	85	2.0	84	79	12	184	48	2	1	47	1.24
56605--56657	17	3.1	17	79	12	56	54	1	0	43	1.11
56607--56662	22	2.6	23	86	8	73	55	1	0	42	1.10
57337--57366	14	2.1	14	93	0	51	50	0	3	46	1.18
57696--57757	23	2.6	24	70	12	56	50	0	1	48	1.10
58005--58070	28	2.5	26	73	17	64	45	1	4	48	1.32
58051--58104	22	2.5	21	79	8	63	48	0	3	48	1.19
58958--58997	10	3.9	11	87	12	50	52	2	0	45	1.14
58966--59018	13	4.4	12	81	11	56	54	0	0	45	0.99
69640--69689	17	2.9	17	77	14	57	48	2	2	48	1.24
69738--69824	19	4.3	19	69	28	56	43	0	2	54	1.13
69745--69794	26	1.9	26	84	15	68	38	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69773--69820	13	3.8	13	83	2	62	41	0	2	56	1.11
70581--71279	181	3.9	177	76	6	589	40	8	8	41	1.66
70612--71279	360	1.9	362	80	4	794	40	8	8	41	1.66
71543--71928	178	2.2	174	79	10	408	41	9	7	41	1.65
72075--72133	25	2.3	26	82	11	77	54	0	3	42	1.17
72096--72168	22	3.2	22	83	11	76	50	0	2	46	1.15
72392--73601	362	3.4	357	77	7	1035	40	7	10	42	1.67
72386--73619	181	6.9	177	76	7	874	39	7	10	42	1.67
73641--74159	179	2.9	179	80	7	559	41	7	9	41	1.66
74499--74536	19	2.0	19	89	0	58	42	0	0	57	0.98
74701--74775	16	4.6	16	72	19	57	46	2	0	50	1.15
74687--74753	19	3.4	19	74	22	57	46	1	0	52	1.09
74694--74762	25	2.8	24	78	6	66	47	1	0	50	1.09
74701--74777	13	6.1	13	68	17	54	46	2	0	50	1.15
75701--75739	12	3.3	12	85	3	53	48	2	0	48	1.15
75702--75759	24	2.4	23	81	13	64	50	3	0	46	1.18
75774--75817	23	2.0	22	95	4	79	45	0	0	54	0.99
76464--76701	120	2.0	120	85	3	318	35	13	8	42	1.74
78338--78383	23	2.0	22	84	16	58	54	8	2	34	1.43
78585--80046	357	4.1	364	75	8	839	40	8	9	41	1.67
78699--81300	182	14.6	180	71	12	1225	40	7	9	41	1.66
80101--80185	25	3.4	24	72	15	73	52	1	1	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80147--80180	13	2.7	13	90	4	52	50	0	0	50	1.00
80169--80208	21	1.9	21	89	0	62	52	2	2	42	1.28
80483--81291	350	2.3	359	78	10	834	39	8	9	42	1.68
81147--81446	146	2.1	146	81	3	345	38	11	9	41	1.73
81427--81481	19	3.1	18	70	20	53	49	9	9	32	1.66
81286--82834	181	8.6	178	76	7	1124	40	9	9	40	1.70
81394--82754	542	2.5	543	81	3	1463	41	8	10	39	1.70
81321--82825	361	4.2	358	77	6	1264	40	9	9	40	1.69
84311--84369	26	2.1	29	84	9	79	44	3	3	49	1.36
84497--84544	25	1.9	25	82	0	60	47	2	2	47	1.25
84872--85203	162	2.0	163	79	5	368	41	7	9	42	1.64
85329--87757	181	13.6	178	75	9	1219	40	8	9	41	1.68
85329--87734	360	6.7	350	73	10	977	41	8	9	41	1.68
86198--88110	536	3.5	538	77	8	1399	41	8	9	41	1.67
86306--87660	717	1.9	719	81	5	1673	40	7	9	42	1.65
87628--87999	205	1.8	203	80	2	449	40	10	9	39	1.73
88795--89311	182	2.9	180	80	5	569	40	8	10	41	1.69
89906--90011	20	5.3	20	66	26	55	46	2	2	48	1.31
90549--90607	20	3.0	20	74	18	61	50	0	0	49	1.00
90579--90619	22	1.9	21	85	5	55	48	0	0	51	1.00
90656--90733	19	4.1	19	73	19	65	56	0	0	43	0.99
90683--90760	12	6.0	14	70	20	55	51	0	1	47	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90648--90733	42	2.0	43	86	8	124	55	0	0	44	0.99

Tables:   1   2

The End!