genome.fa.s227.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold91
Parameters: 2 7 7 80 10 50 1000
Length:  988755

Tables:   1   2   3   4   

This is table  2  of  4  ( 369 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239835--239867	16	2.0	17	88	5	50	45	0	6	48	1.27
243628--243696	31	2.3	29	82	9	84	47	5	1	44	1.35
243631--243695	30	2.1	32	85	5	89	49	6	1	43	1.37
244602--244630	14	2.1	14	100	0	58	34	17	6	41	1.76
244709--244736	7	4.0	7	100	0	56	71	0	0	28	0.86
244670--244713	23	1.9	23	86	9	63	45	9	6	38	1.63
261855--261890	19	1.9	19	88	5	56	61	0	2	36	1.11
261855--261902	19	2.6	19	80	3	53	56	2	4	37	1.30
262844--262904	31	2.0	31	93	0	104	39	4	4	50	1.45
264653--264680	14	2.0	14	100	0	56	42	7	14	35	1.73
268965--268998	9	3.8	9	84	0	50	64	0	14	20	1.28
270805--270843	19	2.1	19	100	0	78	35	0	15	48	1.45
271473--271573	25	4.0	26	70	12	77	18	21	19	39	1.92
271526--271609	25	3.4	24	77	4	69	17	26	21	34	1.96
271477--271597	50	2.4	50	82	6	140	17	23	21	37	1.94
272023--272072	25	2.0	25	100	0	100	40	12	8	40	1.72
277711--277735	8	3.1	8	100	0	50	52	0	24	24	1.48
278096--278247	43	3.5	43	74	8	121	23	16	25	34	1.95
278110--278258	42	3.5	42	75	8	131	23	17	26	32	1.97
288393--288427	17	2.0	18	88	5	54	22	5	5	65	1.36
292204--292322	31	3.8	31	92	3	204	31	24	16	27	1.97
292352--292441	42	2.1	42	95	0	162	33	20	13	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292589--292658	25	2.8	26	86	6	108	27	25	24	22	2.00
293466--293527	27	2.3	27	86	5	81	20	20	19	38	1.93
293584--293761	27	6.6	27	74	8	101	32	7	17	42	1.77
293590--293769	54	3.3	53	81	6	182	31	6	18	43	1.75
293647--293769	27	4.6	27	77	5	117	28	5	21	44	1.74
293801--293944	27	5.3	27	82	3	164	40	7	22	29	1.82
293801--293944	54	2.7	53	85	4	189	40	7	22	29	1.82
296189--296265	31	2.5	31	95	0	136	25	25	19	28	1.99
296293--296379	42	2.1	41	95	2	156	34	17	14	33	1.91
297353--297419	27	2.5	26	79	11	73	22	22	17	37	1.94
297471--297685	27	7.9	27	74	7	112	30	9	18	41	1.82
297475--297622	56	2.7	53	82	4	152	31	8	18	42	1.79
297477--297657	54	3.3	53	82	4	182	30	7	19	43	1.78
297533--297699	54	3.1	54	79	7	153	28	10	21	40	1.86
297689--297858	27	6.3	27	86	0	216	40	7	22	29	1.80
297693--297858	81	2.1	80	89	3	253	40	6	23	29	1.80
301060--301130	31	2.3	31	97	0	133	28	26	16	28	1.97
301158--301245	42	2.1	42	93	0	149	32	17	15	34	1.91
301380--301437	25	2.4	24	83	11	73	25	24	18	31	1.98
301401--301462	25	2.5	26	81	5	65	25	25	17	30	1.97
302271--302335	27	2.4	27	79	5	69	21	23	18	36	1.95
302452--302575	27	4.6	27	74	8	99	29	6	20	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302608--302766	27	5.9	27	87	0	219	38	7	23	30	1.83
302617--302778	81	2.0	81	95	0	288	38	7	24	29	1.83
302624--302798	81	2.2	81	90	0	269	37	8	24	30	1.84
304104--304147	12	3.8	12	84	6	63	15	2	4	77	1.04
304104--304151	23	2.1	23	92	7	80	14	2	4	79	0.98
312427--312505	39	2.0	39	97	0	149	24	21	27	26	1.99
315958--316003	23	2.0	23	84	12	60	45	10	6	36	1.65
315965--316009	23	2.0	23	82	8	56	40	13	8	37	1.76
331174--331241	4	17.0	4	74	17	61	76	1	4	17	1.03
331183--331242	19	3.1	19	81	13	68	78	0	5	16	0.92
331247--331390	3	47.7	3	72	9	114	59	0	8	31	1.32
332484--332521	15	2.5	16	83	12	53	10	0	31	57	1.32
332495--332527	15	2.2	15	94	0	57	12	0	24	63	1.28
332940--333501	177	3.2	174	82	7	568	24	28	21	25	1.99
333231--333452	44	5.0	44	66	14	100	24	28	21	25	1.99
333312--333665	133	2.7	130	82	4	424	25	26	20	28	1.99
333294--333715	133	3.2	132	75	11	396	24	26	20	28	1.99
333866--333954	44	2.0	44	82	6	110	17	29	25	26	1.98
333556--334087	177	3.0	177	78	5	438	25	25	20	28	1.99
332934--334170	619	2.0	620	87	1	1782	24	27	20	27	1.99
340709--340762	18	2.9	18	82	17	67	74	0	1	24	0.92
340729--340922	3	65.7	3	73	13	136	63	0	7	28	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345491--345546	18	3.5	15	81	18	60	37	10	16	35	1.83
345478--345548	17	4.0	17	87	7	97	38	9	14	38	1.79
345478--345548	35	2.0	36	94	2	126	38	9	14	38	1.79
345470--345560	19	4.9	19	89	8	143	37	9	16	36	1.82
345849--345882	17	2.0	17	88	11	52	29	0	2	67	1.05
349968--350244	46	6.0	46	94	0	437	38	14	24	22	1.92
349968--350281	46	6.8	46	92	0	423	39	14	24	21	1.91
351716--351746	11	2.8	11	95	0	53	32	9	19	38	1.84
352370--352398	12	2.3	13	94	5	51	75	0	0	24	0.80
353886--354245	46	7.8	46	93	0	524	39	14	23	21	1.91
362186--362267	39	2.0	41	93	6	141	25	23	35	15	1.94
365124--365328	89	2.3	87	80	9	220	29	18	23	27	1.98
365124--365361	87	2.7	87	77	11	232	31	18	23	26	1.97
364843--365477	298	2.1	298	93	0	1081	31	18	23	26	1.97
365361--365535	78	2.2	78	85	2	226	29	18	24	28	1.98
368716--368793	38	2.1	38	100	0	156	25	12	17	43	1.85
376815--376868	20	2.8	20	71	2	56	64	1	0	33	1.04
378826--378872	24	2.0	24	87	4	69	51	36	2	10	1.49
379200--379233	13	2.6	13	85	0	50	38	17	2	41	1.65
379321--379494	46	3.8	46	89	1	233	21	22	13	41	1.88
379469--379627	45	3.5	45	85	0	192	20	23	18	37	1.94
379502--379625	45	2.8	45	88	4	196	18	24	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382376--382465	28	3.2	27	82	7	110	21	24	22	32	1.98
383553--383586	10	3.3	10	84	8	50	29	8	8	52	1.62
392808--392861	20	2.8	20	71	2	56	64	1	0	33	1.04
393087--393145	30	1.9	31	86	3	84	28	20	3	47	1.66
393355--393409	26	2.1	26	86	6	76	21	0	23	54	1.45
395246--395331	43	2.0	43	86	4	120	24	18	29	27	1.98
395761--395789	12	2.5	12	94	5	51	44	0	6	48	1.29
401568--401634	33	2.0	33	100	0	134	50	5	11	31	1.63
427365--427399	13	2.7	13	86	0	52	17	37	34	11	1.85
429109--429140	16	2.0	16	93	0	55	50	34	6	9	1.60
429204--430089	303	2.9	303	98	0	1718	33	5	21	39	1.77
431887--431944	29	2.0	29	83	6	73	63	0	5	31	1.16
433480--433568	44	2.0	44	88	0	133	26	26	14	31	1.95
433543--433589	21	2.2	21	100	0	94	10	36	14	38	1.81
433497--433633	65	2.1	65	93	0	229	20	30	14	34	1.93
433568--433726	44	3.6	44	94	1	266	24	29	15	30	1.95
433480--433677	109	1.8	109	92	2	335	24	29	15	31	1.95
433660--433793	67	2.0	67	91	0	214	24	28	13	33	1.93
441895--441949	24	2.2	25	87	9	85	47	5	23	23	1.72
441901--441949	24	2.0	24	96	0	89	48	6	22	22	1.72
445844--445891	22	2.2	21	77	3	51	60	0	4	35	1.16
445905--445982	19	3.9	19	74	15	59	60	1	2	35	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445905--445964	10	5.8	10	74	20	52	61	1	1	35	1.16
445924--445982	13	4.4	13	76	14	57	61	0	1	37	1.07
445897--445982	14	5.9	15	72	20	51	60	1	2	36	1.17
451350--451451	28	3.7	27	75	6	87	27	13	28	30	1.94
459698--459820	57	2.1	57	86	1	165	25	24	17	32	1.97
468852--468915	33	2.0	32	87	3	92	35	18	23	21	1.95
473858--473897	19	2.1	19	90	0	62	52	2	15	30	1.55
480280--480324	17	2.7	17	82	3	56	31	13	8	46	1.74
481777--481907	58	2.3	58	89	2	201	22	22	21	34	1.97
493287--493485	40	5.0	40	91	0	299	27	29	20	23	1.99

Tables:   1   2   3   4