genome.fa.s402.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3583
Parameters: 2 7 7 80 10 50 1000
Length:  552418

Tables:   1   2   

This is table  2  of  2  ( 176 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382269--382293	12	2.1	12	100	0	50	40	8	16	36	1.77
382643--383006	47	7.7	47	74	12	223	28	21	27	22	1.99
382643--382957	94	3.4	94	80	5	309	27	21	28	22	1.99
383073--383138	33	2.0	33	100	0	132	51	0	24	24	1.48
385031--385056	13	2.0	13	100	0	52	46	7	7	38	1.61
385286--385340	25	2.2	25	81	12	60	47	5	3	43	1.44
391594--391618	5	5.0	5	100	0	50	60	0	0	40	0.97
395318--395396	40	2.0	40	100	0	158	30	17	18	32	1.95
397675--397730	16	3.4	17	79	18	57	17	3	3	75	1.10
397677--397732	15	3.7	15	77	15	53	17	5	3	73	1.17
401379--401442	31	2.1	31	93	0	110	23	23	15	37	1.93
401651--401759	25	4.4	25	85	7	125	28	22	21	28	1.99
404463--404514	24	2.1	25	86	10	72	21	26	19	32	1.97
415439--415981	205	2.6	204	89	0	798	29	20	18	30	1.97
416888--416918	8	3.9	8	100	0	62	0	9	0	90	0.46
424063--424112	15	3.5	15	82	15	61	42	12	24	22	1.87
424133--424162	14	2.1	14	93	0	51	46	10	6	36	1.64
431744--431865	61	2.0	61	98	0	235	19	21	30	28	1.98
434431--435401	207	4.7	207	92	0	1534	31	17	21	29	1.96
437068--437153	30	3.1	27	70	23	72	37	4	1	56	1.27
437677--437736	5	11.6	5	72	13	50	30	6	0	63	1.20
437802--437838	18	2.2	18	85	9	51	40	2	2	54	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442572--442684	22	5.0	21	76	15	93	35	18	20	25	1.95
442574--442687	45	2.5	43	76	8	111	37	18	19	24	1.94
442574--442687	23	5.1	22	72	9	79	37	18	19	24	1.94
442657--442708	24	2.2	23	82	3	59	40	19	19	21	1.92
444593--444633	19	2.2	20	91	8	68	34	24	4	36	1.77
444736--444794	27	2.2	27	100	0	118	42	15	10	32	1.80
446058--446114	25	2.3	25	84	0	87	31	19	28	21	1.97
463821--463928	43	2.5	43	80	3	110	31	26	14	26	1.95
468119--468303	40	4.7	40	86	6	234	24	21	27	26	1.99
479485--479662	27	6.6	27	83	3	205	26	15	28	29	1.96
479486--479641	82	1.9	81	88	3	233	26	15	28	29	1.96
479482--479662	82	2.2	81	83	2	229	27	15	27	29	1.96
486197--486390	40	4.8	40	89	1	289	26	27	22	23	1.99
486197--486391	81	2.4	81	92	0	311	26	28	22	23	1.99
498465--498534	27	2.6	27	82	6	88	44	17	15	22	1.86
501608--501668	30	2.0	30	83	0	77	31	21	8	39	1.82
504468--504646	40	4.6	40	88	4	258	25	26	23	24	2.00
514323--514542	76	2.8	79	84	9	283	24	22	27	25	2.00
514323--514542	40	5.7	40	83	10	269	24	22	27	25	2.00
519586--519809	40	5.6	40	81	8	267	25	25	23	25	2.00
519586--519809	83	2.8	80	83	8	276	25	25	23	25	2.00
528406--528626	40	5.6	41	86	7	289	24	22	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528854--528895	22	1.9	22	85	9	59	33	9	14	42	1.78
531694--531739	23	2.0	23	100	0	92	47	13	13	26	1.78
532680--532873	55	3.6	53	75	10	160	20	22	18	39	1.93
534294--534372	37	2.1	37	86	4	106	25	29	18	26	1.98
534434--534742	47	6.6	47	97	0	591	30	29	8	32	1.87
535492--535529	16	2.4	16	100	0	76	31	31	10	26	1.90
537893--538075	40	4.6	40	79	6	176	24	26	22	26	2.00
537880--538037	80	2.0	80	83	2	201	25	26	20	27	1.99
538388--538459	29	2.5	29	86	4	92	27	31	13	26	1.94
540364--540442	37	2.1	37	88	4	115	25	30	18	25	1.98
540561--541095	47	11.4	47	95	0	928	29	29	8	32	1.87
544830--544873	17	2.6	18	82	7	56	54	13	0	31	1.39

Tables:   1   2

The End!