genome.fa.s73.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold477.1
Parameters: 2 7 7 80 10 50 1000
Length:  1033125

Tables:   1   2   3   

This is table  3  of  3  ( 344 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835902--836030	34	3.9	33	82	5	170	42	14	0	41	1.51
836116--836150	16	2.3	15	90	5	52	60	28	0	11	1.32
836668--836706	16	2.4	16	82	4	51	38	10	0	51	1.36
836906--837087	46	4.0	46	91	1	267	24	23	14	37	1.93
838887--838954	30	2.3	30	82	5	75	27	17	5	48	1.70
843516--843764	120	2.1	120	95	0	444	40	9	16	32	1.81
843516--843760	40	6.1	40	92	0	382	40	9	16	33	1.81
843768--843802	18	1.9	18	94	0	61	31	14	20	34	1.92
844311--844343	17	1.9	17	93	0	57	33	3	0	63	1.10
844544--844616	16	4.6	16	69	17	53	30	20	4	45	1.70
844544--844616	32	2.3	32	80	13	87	30	20	4	45	1.70
846160--846193	7	4.7	7	85	7	50	88	0	11	0	0.52
846169--846193	13	1.9	13	100	0	50	88	0	12	0	0.53
851494--851581	29	3.0	29	100	0	176	40	14	23	20	1.90
854004--854038	17	2.0	18	88	5	54	17	11	0	71	1.14
854446--854516	15	4.7	15	72	10	56	63	2	2	30	1.23
858030--858062	15	2.3	15	89	5	50	42	9	0	48	1.35
860856--860900	22	2.0	22	95	0	81	15	26	15	42	1.87
873458--873583	61	2.1	61	98	0	243	34	6	14	45	1.70
875206--875240	18	1.9	18	94	0	61	45	20	0	34	1.51
889098--889169	14	5.3	14	74	11	60	72	5	2	19	1.17
889098--889180	22	3.9	22	79	3	80	72	4	2	20	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
889098--889180	11	7.7	11	77	4	71	72	4	2	20	1.15
889104--889167	19	3.3	19	82	8	67	73	4	3	18	1.14
895061--895111	21	2.4	21	100	0	102	5	17	31	45	1.72
898391--898422	16	2.0	16	100	0	64	43	6	25	25	1.77
898987--899013	13	2.1	13	100	0	54	44	22	14	18	1.86
904154--904216	31	2.0	31	96	0	117	6	31	4	57	1.45
908564--908589	3	8.7	3	100	0	52	30	0	0	69	0.89
908997--909091	42	2.3	42	81	0	118	26	31	11	30	1.91
909212--909265	16	3.4	16	76	5	65	24	27	22	25	2.00
921589--921654	31	2.1	31	94	0	114	31	18	22	27	1.97
924330--924382	23	2.4	22	76	20	56	9	18	1	69	1.25
924377--924432	27	2.1	27	86	0	76	7	26	0	66	1.18
928111--928163	23	2.4	22	76	20	56	9	18	1	69	1.25
934116--934176	28	2.0	29	87	12	88	75	3	8	13	1.15
935100--935156	5	11.0	5	77	17	55	77	3	17	1	1.00
935100--935156	16	3.7	14	80	17	60	77	3	17	1	1.00
935204--935235	12	2.7	12	95	0	55	43	12	18	25	1.85
937076--937135	30	2.1	29	81	12	70	28	6	16	48	1.71
940777--940927	76	2.0	76	97	0	284	26	25	17	31	1.97
941318--941352	18	1.9	18	88	0	52	25	8	11	54	1.64
942929--943025	30	3.2	30	75	2	79	26	25	16	30	1.97
944643--944739	30	3.2	31	76	5	110	27	27	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946421--946458	18	2.2	18	86	9	53	73	5	7	13	1.22
947369--947414	9	4.6	10	80	15	51	78	6	15	0	0.95
947387--947432	15	3.1	14	84	9	56	78	2	17	2	0.96
947365--947432	21	3.2	20	77	8	64	77	4	16	1	0.99
947480--947510	12	2.6	12	100	0	62	45	12	16	25	1.83
947513--947537	12	2.1	12	100	0	50	76	0	16	8	1.02
947507--947562	18	3.1	18	76	5	51	69	3	19	7	1.27
947513--947594	30	2.7	31	79	5	96	63	1	21	13	1.36
955006--955115	26	4.2	26	97	0	184	33	5	24	36	1.79
957820--957849	16	1.9	16	93	6	53	60	10	3	26	1.45
958246--958272	10	2.7	10	100	0	54	40	29	11	18	1.85
958246--958294	10	4.8	10	85	5	53	36	32	8	22	1.84
965474--965638	24	6.9	24	87	2	224	32	31	13	22	1.93
967450--967528	31	2.5	31	97	0	149	29	26	18	25	1.98
967747--967816	25	2.8	25	89	4	97	25	24	25	24	2.00
968626--968690	27	2.4	27	79	5	69	21	23	18	36	1.95
968648--968699	27	1.9	28	84	7	72	17	21	23	38	1.93
968720--968903	54	3.4	54	76	10	169	31	8	20	40	1.81
968721--968903	27	6.7	27	79	6	147	31	8	20	40	1.81
968807--968945	27	5.2	26	79	6	118	28	9	21	40	1.84
968935--969107	27	6.4	27	87	2	213	39	6	24	28	1.81
970378--970410	17	1.9	17	93	0	57	42	6	0	51	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973106--973130	12	2.1	12	100	0	50	56	8	28	8	1.57
973443--973662	40	5.6	40	82	5	259	24	25	24	25	2.00
978085--978424	27	12.6	27	83	1	380	40	20	9	30	1.83
978463--978603	27	5.2	27	88	0	120	34	17	20	26	1.95
978482--978612	27	4.9	27	85	3	165	33	16	22	27	1.95
979057--979121	22	3.0	22	80	8	78	20	23	23	33	1.97
979280--979353	27	2.8	27	86	10	91	17	24	20	37	1.93
979493--979661	6	27.3	6	74	16	132	19	17	15	47	1.82
979493--979604	31	3.6	31	95	1	197	19	16	16	48	1.82
979547--979659	43	2.6	43	91	0	172	18	18	15	46	1.84
979516--979652	37	3.7	36	81	9	161	19	18	15	46	1.84
982460--982699	119	2.0	120	94	0	419	29	18	19	32	1.96
987263--987296	17	2.0	17	88	0	50	82	0	17	0	0.67
988558--988657	40	2.5	40	85	3	121	22	24	28	26	1.99
988555--988692	40	3.5	40	78	8	113	23	23	27	25	2.00
991622--991720	42	2.3	42	81	8	121	30	25	19	25	1.98
996384--996567	67	2.8	64	75	8	167	28	17	30	23	1.97
998779--998812	17	2.0	17	88	0	50	82	0	17	0	0.67
1000074--1000173	40	2.5	40	85	3	121	22	24	28	26	1.99
1000071--1000208	40	3.5	40	78	8	113	23	23	27	25	2.00
1003138--1003236	42	2.3	42	81	8	121	30	25	19	25	1.98
1011700--1011871	67	2.6	66	82	7	179	32	16	28	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015495--1015534	19	2.1	19	95	0	71	52	15	7	25	1.68
1015636--1015799	43	3.8	43	76	16	153	32	26	17	23	1.96
1017830--1017860	15	2.1	15	93	0	53	19	0	25	54	1.44
1018433--1018541	55	2.0	56	92	1	184	30	13	21	34	1.92
1018530--1018554	13	1.9	13	100	0	50	24	0	24	52	1.48
1025828--1025891	33	1.9	33	100	0	128	26	9	23	40	1.85
1028111--1028334	27	8.3	27	91	0	340	29	22	7	39	1.82
1028111--1028361	54	4.6	54	87	0	340	31	22	7	38	1.82
1028111--1028361	81	3.1	81	89	0	358	31	22	7	38	1.82
1028122--1028511	27	14.4	27	82	6	191	34	21	8	35	1.84
1028327--1028559	54	4.3	54	79	4	204	39	21	10	29	1.87
1028318--1028502	81	2.3	81	80	5	212	40	19	9	30	1.84
1028377--1028533	81	2.0	80	82	8	194	38	20	10	29	1.87
1028521--1028711	27	7.0	27	85	0	256	36	20	20	22	1.96
1028914--1029007	25	3.8	25	84	4	120	25	23	24	26	2.00
1028926--1029020	25	3.8	25	81	9	81	26	24	23	26	2.00

Tables:   1   2   3

The End!