genome.fa.s73.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold477.1
Parameters: 2 7 7 80 10 50 1000
Length:  1033125

Tables:   1   2   3   

This is table  2  of  3  ( 344 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351960--352185	116	1.9	116	89	1	346	28	14	18	38	1.90
361038--361073	3	12.0	3	93	0	63	30	0	33	36	1.58
370681--370730	19	2.9	17	75	18	50	62	0	2	36	1.07
371514--371558	21	2.0	23	83	8	58	42	2	2	53	1.25
372925--373138	95	2.3	95	85	3	297	41	6	7	44	1.58
377857--377886	14	2.1	14	93	0	51	76	0	0	23	0.78
380725--380781	22	2.5	23	85	2	71	35	31	3	29	1.75
392012--392261	133	1.9	129	87	5	362	51	13	10	24	1.72
391961--392312	126	2.7	132	80	5	380	51	15	9	23	1.73
393141--393173	6	5.5	6	100	0	66	48	0	15	36	1.45
406286--406387	51	2.0	51	100	0	204	29	7	27	35	1.85
408144--408216	23	2.8	25	74	24	69	43	0	0	56	0.99
408137--408216	29	2.9	27	72	18	76	45	0	1	53	1.08
410208--410247	17	2.4	17	86	0	53	65	0	2	32	1.06
410761--410787	14	1.9	14	100	0	54	29	3	7	59	1.42
413506--413542	18	2.1	18	100	0	74	37	10	16	35	1.83
414698--414748	24	2.1	25	85	3	68	62	1	1	33	1.17
415102--415146	22	2.1	22	88	12	67	57	13	2	26	1.48
423812--424239	85	5.0	85	80	6	429	36	20	10	32	1.87
423812--424220	169	2.4	172	82	7	476	36	20	10	33	1.87
425307--425339	17	2.1	17	88	11	52	30	0	9	60	1.27
426602--426722	44	2.7	45	87	2	172	35	17	22	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426602--426772	45	3.8	45	80	6	161	36	18	22	22	1.95
426737--426850	46	2.5	45	82	4	131	42	15	21	20	1.89
436666--436690	12	2.1	12	100	0	50	44	0	0	56	0.99
440150--440188	15	2.5	15	88	12	53	51	0	2	46	1.14
440209--440238	15	1.9	16	93	6	53	73	0	0	26	0.84
451753--451812	20	3.2	20	68	22	67	50	6	10	33	1.62
451741--451812	35	2.1	35	100	0	144	52	8	8	30	1.61
469299--469345	20	2.3	20	85	0	67	27	27	17	27	1.97
469670--469863	45	4.3	45	91	0	289	41	15	18	24	1.89
474244--474273	15	2.1	15	93	6	53	46	13	0	40	1.43
475671--475698	3	9.3	3	100	0	56	67	0	0	32	0.91
477278--477311	14	2.4	14	95	0	59	47	23	17	11	1.81
478390--478416	14	1.9	14	100	0	54	44	7	0	48	1.31
481793--481902	48	2.3	48	82	0	121	13	59	9	18	1.60
481844--481909	27	2.5	26	73	7	69	13	59	7	19	1.58
481883--481993	42	2.6	42	78	0	114	22	56	3	17	1.56
481924--481998	15	5.0	15	68	18	57	25	60	1	13	1.41
482049--482159	42	2.6	42	76	0	114	20	58	3	17	1.53
482130--482212	12	6.7	12	69	13	60	21	61	1	15	1.41
482422--482473	21	2.5	21	77	0	59	19	53	3	23	1.61
482553--482659	45	2.5	44	81	7	121	27	55	0	17	1.43
483767--483812	18	2.6	18	80	12	51	41	2	2	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484179--484221	19	2.1	21	87	8	63	46	0	0	53	1.00
484184--484230	20	2.4	19	85	7	58	44	2	0	53	1.12
497477--497539	33	1.9	33	81	12	76	41	12	7	38	1.73
498897--498936	20	2.0	20	85	9	55	55	25	17	2	1.55
499947--499993	9	4.5	10	77	17	51	31	4	0	63	1.13
509416--509480	28	2.7	23	75	17	60	36	10	3	49	1.53
509890--509918	5	6.0	5	96	4	51	20	0	0	79	0.74
511631--511690	31	1.9	31	86	0	84	23	13	20	43	1.86
517437--517497	13	4.8	12	71	16	52	63	1	0	34	1.04
532825--532864	20	2.0	20	100	0	80	50	0	5	45	1.23
533078--533118	19	2.2	19	91	8	66	68	0	31	0	0.90
552319--552385	31	2.2	31	81	10	75	32	14	20	31	1.93
552793--552861	16	4.2	16	88	3	111	26	1	36	36	1.66
552793--552861	33	2.1	32	91	2	111	26	1	36	36	1.66
552842--552932	45	2.0	45	85	2	121	27	6	28	37	1.82
553098--553131	18	1.9	18	88	5	52	52	0	0	47	1.00
556251--556360	33	3.3	33	83	3	159	31	7	14	46	1.72
556337--556378	18	2.3	18	100	0	84	23	0	26	50	1.50
557729--557841	28	3.6	28	66	26	75	32	7	4	54	1.49
557731--557830	32	3.0	32	72	18	105	32	8	4	56	1.47
557828--557856	15	1.9	15	100	0	58	20	10	6	62	1.50
563062--563090	15	1.9	15	100	0	58	20	34	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564484--564521	19	2.0	19	85	10	51	50	10	0	39	1.37
564928--564959	3	10.7	3	100	0	64	31	0	0	68	0.90
575142--575287	73	2.0	73	98	0	283	43	10	15	30	1.81
585545--585585	21	2.0	21	90	0	64	19	29	21	29	1.98
594851--594885	18	1.9	18	88	0	52	54	2	5	37	1.39
610736--610871	70	1.9	70	89	5	213	39	9	11	39	1.73
618108--618139	13	2.3	15	89	10	50	75	6	12	6	1.19
618593--618629	18	2.1	18	94	0	65	29	35	24	10	1.89
627042--627134	18	5.2	18	90	0	150	31	16	24	27	1.96
627042--627134	36	2.6	36	96	0	168	31	16	24	27	1.96
628729--628796	33	2.1	33	86	8	95	30	4	11	52	1.57
629384--629423	19	2.1	19	85	0	53	45	0	2	52	1.14
640561--640596	13	2.8	14	84	16	51	27	25	0	47	1.52
640548--640588	18	2.2	19	87	12	59	29	24	0	46	1.53
640711--640845	39	3.4	38	73	8	101	28	28	20	23	1.99
641085--641123	18	2.1	19	90	4	62	48	10	0	41	1.37
642439--642495	5	11.0	5	78	14	62	56	1	0	42	1.10
642438--642493	12	4.5	12	81	16	69	55	1	0	42	1.10
642440--642495	26	2.2	26	90	6	69	55	1	0	42	1.10
643448--643555	15	7.2	15	69	12	87	25	23	7	43	1.79
643438--643561	30	4.1	30	95	1	212	25	25	6	42	1.78
648144--648251	15	7.2	15	69	12	78	26	21	7	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648134--648257	30	4.1	30	91	1	194	26	23	6	43	1.78
662024--662116	18	5.2	18	90	0	150	27	24	16	31	1.96
667072--667122	22	2.4	22	96	3	95	45	9	9	35	1.71
667493--667536	23	2.0	22	86	4	61	47	0	13	38	1.43
672020--672084	27	2.4	26	80	10	67	58	3	4	33	1.34
677897--677930	17	2.0	17	88	0	50	44	8	2	44	1.50
686109--686160	24	2.2	24	85	0	68	53	9	3	32	1.51
693302--693332	3	10.0	3	93	6	53	32	0	3	64	1.09
694334--694363	3	10.0	3	100	0	60	33	0	0	66	0.92
703830--703882	27	2.0	28	85	7	74	20	5	7	66	1.38
706036--706064	3	9.7	3	100	0	58	31	0	0	68	0.89
706456--706486	14	2.2	14	100	0	62	41	25	12	19	1.87
724388--724476	30	3.0	30	96	0	169	24	35	22	16	1.95
725877--726042	53	3.1	53	88	6	221	25	15	28	30	1.96
730888--730966	34	2.3	34	80	0	86	37	16	6	39	1.74
735893--735929	18	2.1	18	90	10	58	29	16	2	51	1.58
738671--738771	49	2.1	49	96	0	184	38	17	14	28	1.90
742214--742265	14	3.5	14	75	14	50	42	1	0	55	1.10
749329--749771	75	5.9	75	94	0	769	12	27	16	43	1.84
759120--759158	10	3.8	10	86	3	51	0	46	0	53	1.00
775315--775466	78	1.9	78	86	0	214	31	21	15	32	1.94
783826--783866	10	3.9	11	78	21	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
792430--792460	12	2.6	12	100	0	62	61	6	16	16	1.54
798399--798660	133	2.0	133	98	0	506	46	17	14	20	1.83
801030--801098	33	2.2	31	85	10	95	39	2	2	55	1.30
801807--802125	167	1.9	167	80	4	358	36	21	10	30	1.88
804006--804049	15	2.9	15	100	0	88	47	6	20	25	1.74
820739--820802	30	2.1	30	88	0	92	26	28	3	42	1.70
824737--825147	126	3.3	126	89	0	590	28	17	17	36	1.93
827067--827173	28	3.8	28	92	0	160	34	10	25	29	1.89
834684--834862	39	4.6	39	87	0	259	13	25	22	37	1.91
834846--835387	271	2.0	271	97	0	1021	32	12	21	34	1.90

Tables:   1   2   3