Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold643.1
Parameters: 2 7 7 80 10 50 1000
Length:  856865

Tables:   1   2   3   4   

This is table  4  of  4  ( 403 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
796583--796669
46
1.9
45
86
6
122
16
18
19
45
1.85
797586--797622
19
2.0
19
94
5
67
0
18
0
81
0.70
797672--797713
8
5.1
8
94
5
75
11
0
11
76
1.03
797672--797713
17
2.6
16
96
3
75
11
0
11
76
1.03
797641--797681
6
6.8
6
100
0
82
17
0
14
68
1.22
798518--798576
29
2.0
29
96
0
109
49
6
15
28
1.70
798500--798582
29
3.2
25
73
20
71
56
6
14
22
1.60
800316--800351
16
2.2
16
90
0
54
47
19
13
19
1.83
802077--802119
17
2.4
18
81
14
54
60
4
4
30
1.37
804016--804308
125
2.3
124
80
5
300
34
16
16
32
1.91
804093--804343
125
2.0
128
85
3
339
33
15
16
33
1.91
805825--805873
26
2.0
24
84
15
64
75
2
10
12
1.13
806619--806816
41
4.8
41
74
8
157
26
21
22
28
1.99
806712--807008
148
2.0
148
97
0
567
27
20
22
29
1.99
806976--807695
50
14.3
50
70
5
259
25
19
22
32
1.98
807063--807701
100
6.4
100
84
2
775
24
20
23
32
1.98
808732--808779
21
2.1
21
82
17
53
2
14
0
83
0.74
808733--808779
16
2.8
16
90
6
67
2
14
0
82
0.75
809171--809210
17
2.4
17
86
0
53
5
2
5
87
0.73
812391--812434
22
2.0
22
100
0
88
54
0
18
27
1.44
812659--812892
125
1.9
126
83
2
310
34
14
15
34
1.89
816436--816499
24
2.7
24
97
0
119
51
4
0
43
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
817254--817285
13
2.5
13
100
0
64
40
15
12
31
1.85
818607--818662
20
2.8
20
79
12
71
58
0
5
35
1.21
818614--818668
20
2.8
19
86
10
67
63
0
5
30
1.17
826494--826569
38
2.0
38
94
0
134
51
6
14
27
1.67
829316--829370
25
2.2
24
93
0
74
16
23
21
38
1.93
829314--829422
22
4.6
24
82
9
118
16
22
19
41
1.90
830970--831019
17
2.7
20
78
18
70
10
0
44
46
1.37
835609--835658
17
2.7
20
78
18
70
10
0
44
46
1.37
836622--836673
6
8.7
6
100
0
104
30
34
17
17
1.93
837536--837608
32
2.2
33
82
4
85
42
9
6
41
1.64
840170--840226
16
3.6
16
87
0
87
47
3
3
45
1.37
841915--841972
28
2.1
28
96
0
107
44
1
6
46
1.40
842291--842342
23
2.3
23
83
3
61
36
15
3
44
1.65
842302--842351
23
2.2
23
100
0
100
24
12
4
60
1.49
844150--844298
50
2.8
55
85
7
209
22
29
22
25
1.99
844393--844424
13
2.5
13
94
0
55
56
12
0
31
1.37
844636--844693
30
1.9
30
89
0
89
31
24
3
41
1.71
849326--849385
21
2.8
22
70
7
52
38
26
18
16
1.92
854263--854407
73
2.0
73
97
0
272
37
11
19
31
1.86
854700--854842
73
2.0
73
98
0
277
37
2
16
44
1.60
856567--856729
82
2.0
82
93
0
281
40
12
19
27
1.88

Tables:   1   2   3   4

The End!