genome.fa.s1063.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold187
Parameters: 2 7 7 80 10 50 1000
Length:  870467

Tables:   1   2   3   

This is table  2  of  3  ( 284 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327036--327090	28	1.9	28	85	10	76	56	1	1	40	1.21
327451--327489	19	2.1	19	90	9	62	35	0	5	58	1.20
327455--327496	19	2.2	19	87	8	59	40	0	2	57	1.12
330598--330639	18	2.3	18	87	0	57	45	7	28	19	1.76
332891--332933	19	2.2	20	87	4	61	25	0	4	69	1.07
337934--337982	20	2.3	21	75	6	55	48	2	2	46	1.25
338355--338414	26	2.3	25	80	11	75	60	3	1	35	1.23
338318--338415	37	2.6	38	77	16	98	61	3	2	33	1.23
338724--338758	15	2.2	16	90	5	54	77	0	0	22	0.78
338936--338987	22	2.4	22	83	6	70	34	0	7	57	1.27
338941--339011	22	3.4	22	73	11	69	32	0	7	60	1.23
339022--339086	20	3.3	20	72	12	62	30	3	3	63	1.25
339022--339085	10	6.5	10	73	10	51	31	3	3	62	1.26
341933--341977	11	4.0	11	81	16	56	68	0	2	28	1.01
342699--342752	23	2.3	23	90	0	81	42	0	11	46	1.39
344899--345192	43	6.8	43	87	5	398	25	30	20	23	1.99
345507--345555	21	2.3	21	85	0	62	6	42	16	34	1.73
345510--345672	87	1.9	88	85	3	231	12	30	17	39	1.86
345510--345693	87	2.1	87	82	4	228	11	30	17	39	1.86
351453--351627	73	2.4	74	94	0	298	32	20	18	28	1.96
352703--352796	41	2.3	41	79	3	109	20	23	24	31	1.98
352767--353082	41	7.8	40	85	5	386	31	22	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353190--353276	41	2.1	41	81	8	97	17	21	24	36	1.94
354312--354410	51	1.9	51	91	0	162	31	8	17	43	1.78
354567--354600	18	1.9	18	88	5	52	47	0	2	50	1.16
358081--358128	20	2.3	20	78	7	51	50	6	16	27	1.69
360346--360377	17	1.9	16	93	6	55	46	3	0	50	1.17
361930--361962	17	1.9	17	88	11	50	36	9	0	54	1.32
364473--364542	6	11.3	6	82	11	88	67	1	15	15	1.31
364699--364742	23	1.9	24	86	9	65	38	0	18	43	1.50
365948--365993	24	1.9	24	82	8	58	28	6	21	43	1.77
385206--385232	14	1.9	14	100	0	54	66	7	0	25	1.17
386462--386574	57	2.0	57	89	5	174	47	7	17	27	1.73
394710--394789	23	3.5	23	93	3	135	47	15	5	32	1.66
398132--398170	20	2.0	20	94	0	69	56	20	2	20	1.54
399915--399947	17	2.0	17	94	5	59	45	6	18	30	1.73
406164--406458	51	5.8	51	80	7	307	30	25	14	29	1.95
406164--406454	102	2.9	102	89	0	404	30	26	14	28	1.95
406165--406458	153	1.9	151	82	4	358	30	25	14	28	1.95
409285--409416	41	3.2	40	79	4	147	25	25	15	32	1.96
409704--409739	16	2.2	16	100	0	72	11	0	36	52	1.37
416504--416622	41	2.9	40	84	2	166	21	29	14	35	1.92
423808--423876	27	2.7	25	81	4	84	27	27	21	23	1.99
427341--428206	433	2.0	433	100	0	1732	33	23	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429374--429407	17	2.0	17	100	0	68	58	11	11	17	1.62
436886--436982	31	3.2	32	73	14	89	41	5	25	27	1.77
442502--442532	16	2.0	15	93	6	53	6	29	0	64	1.18
450743--450803	18	3.4	18	90	0	95	36	24	9	29	1.88
450752--450818	18	3.9	18	86	5	86	35	22	8	32	1.85
452208--452278	21	3.5	20	76	10	65	32	0	0	67	0.91
462624--462658	14	2.5	14	90	0	52	45	14	2	37	1.59
464164--464281	43	2.7	44	78	2	132	32	27	19	20	1.97
466354--466390	18	2.1	18	94	0	65	29	35	2	32	1.72
470925--471014	42	2.1	42	81	0	99	24	26	33	15	1.95
471574--471622	25	2.0	25	83	0	62	30	26	16	26	1.97
475282--475311	1	30.0	1	93	0	51	0	3	0	96	0.21
475279--475308	14	2.1	14	100	0	60	0	6	0	93	0.35
475277--475310	16	2.1	17	94	5	61	0	8	0	91	0.43
475434--475465	1	32.0	1	93	0	55	0	3	0	96	0.20
477196--477248	21	2.5	21	81	0	61	47	0	7	45	1.31
477804--477854	22	2.4	22	77	9	52	39	23	3	33	1.73
486750--486828	29	2.7	30	84	5	92	35	6	25	32	1.81
486757--486838	29	2.8	29	77	3	85	37	6	25	30	1.80
487374--487398	13	1.9	13	100	0	50	12	8	16	64	1.49
490847--490898	25	2.1	24	86	10	70	21	17	17	44	1.87
490881--490942	25	2.5	24	77	10	63	20	19	22	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497167--497256	25	3.6	25	77	4	85	22	21	21	35	1.96
497546--497634	42	2.1	42	97	0	169	25	28	30	15	1.96
498643--498734	11	8.3	11	71	23	52	54	5	2	38	1.36
498643--498673	16	1.9	16	93	0	53	54	3	0	41	1.16
500973--501026	27	2.0	26	89	10	83	46	31	0	22	1.52
506560--506668	55	2.0	55	98	0	209	34	0	17	47	1.48
508944--509007	32	2.0	32	100	0	128	62	9	9	18	1.52
510485--510537	27	2.0	27	81	7	63	45	3	3	47	1.39
510894--510957	32	2.0	32	100	0	128	37	9	15	37	1.80
511844--511870	11	2.5	11	100	0	54	55	22	7	14	1.64
513247--513273	11	2.5	11	100	0	54	55	22	7	14	1.64
523965--524001	9	4.1	9	85	0	56	48	13	8	29	1.71
525202--525301	39	2.6	39	85	0	137	46	17	3	34	1.63
526383--526409	14	1.9	14	100	0	54	44	11	7	37	1.68
531639--531733	30	3.2	30	73	10	95	21	23	17	37	1.94
531643--531729	31	2.9	30	75	10	86	20	25	17	36	1.94
534001--534156	29	5.4	29	83	4	154	23	25	11	40	1.88
534030--534156	58	2.2	58	87	2	184	22	25	11	40	1.86
534141--534211	29	2.4	29	88	0	97	29	21	11	38	1.88
538138--538179	21	2.0	21	100	0	84	28	23	14	33	1.94
539953--540004	24	2.2	24	89	0	77	51	5	3	38	1.44
544270--544326	24	2.4	24	88	5	80	45	8	5	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544283--544333	24	2.1	24	88	0	75	50	5	3	39	1.45
546463--546511	25	2.0	25	87	0	71	28	16	6	48	1.69
547853--547879	14	1.9	14	100	0	54	59	7	7	25	1.51
550991--551039	24	2.0	24	92	0	80	48	8	4	38	1.52
552746--552776	15	2.1	14	94	5	53	22	3	0	74	0.96
552748--552798	23	2.1	26	85	10	72	21	1	1	74	1.02
552759--552811	18	2.8	19	78	18	65	20	3	1	73	1.08
556121--556197	12	6.0	13	69	11	52	29	1	5	63	1.24
568407--568485	30	2.7	30	80	5	90	54	6	8	30	1.56
568597--568635	2	19.5	2	100	0	78	51	0	0	48	1.00
586812--586853	22	1.9	22	85	9	59	52	7	4	35	1.50
586940--586980	16	2.6	16	84	0	55	51	2	0	46	1.14
612780--612822	18	2.3	19	80	15	54	4	20	0	74	1.00
614158--614203	22	2.1	22	91	0	74	13	19	17	50	1.78
615076--615101	13	2.0	13	100	0	52	38	7	7	46	1.61
627711--627750	21	1.9	21	85	10	55	62	7	5	25	1.42
631482--631506	12	2.1	12	100	0	50	24	16	32	28	1.96
632258--632301	12	3.5	13	84	9	56	70	0	0	29	0.88
632584--632640	28	2.1	26	84	12	71	71	0	19	8	1.11
632606--632651	22	2.2	20	84	11	56	73	0	15	10	1.08
634775--634808	16	2.1	16	88	5	50	8	0	14	76	1.01
640431--640456	11	2.4	11	100	0	52	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645983--646011	12	2.3	13	94	5	51	17	44	6	31	1.75
646878--646923	22	2.1	22	95	0	83	21	15	19	43	1.87
647290--647448	20	8.0	20	75	4	133	16	20	15	46	1.84
649855--649886	16	1.9	17	93	6	57	75	0	15	9	1.05
650093--650240	69	2.2	69	84	4	185	32	13	20	33	1.91
651178--651229	16	3.2	16	73	10	52	32	15	11	40	1.83
654428--654607	28	5.8	29	66	21	105	32	13	18	35	1.90
654410--654608	65	3.1	65	100	0	398	32	15	18	33	1.92
654456--654578	37	3.6	37	69	19	131	34	16	19	30	1.94
655600--655687	45	2.0	45	90	0	140	51	6	17	25	1.69

Tables:   1   2   3