Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold187
Parameters: 2 7 7 80 10 50 1000
Length:  870467

Tables:   1   2   3   

This is table  3  of  3  ( 284 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
656219--656243
13
1.9
13
100
0
50
40
0
8
52
1.31
663631--663667
19
1.9
19
88
0
56
37
29
5
27
1.79
665285--665345
22
2.8
22
80
14
72
37
18
24
19
1.94
674879--674974
41
2.3
41
85
0
129
32
15
27
25
1.96
674904--674978
21
3.7
21
70
18
68
33
16
28
22
1.95
678875--678913
19
2.1
19
90
4
62
35
0
2
61
1.10
681544--681570
14
1.9
14
100
0
54
51
7
18
22
1.70
711379--711504
63
2.0
63
100
0
252
38
3
19
39
1.67
716043--716071
2
14.5
2
100
0
58
48
0
0
51
1.00
717598--717625
12
2.3
12
100
0
56
0
57
0
42
0.99
719084--719109
9
2.9
9
100
0
52
34
19
11
34
1.88
722291--722325
18
1.9
18
94
0
61
14
25
11
48
1.77
723975--723999
12
2.1
12
100
0
50
32
16
16
36
1.90
725678--725709
2
16.0
2
93
0
55
46
3
0
50
1.17
725729--725778
23
2.2
23
88
0
73
6
12
22
60
1.53
725736--725814
23
3.4
23
85
3
95
7
8
18
64
1.45
725741--725814
24
3.1
24
86
1
96
8
8
17
66
1.42
732410--732469
30
2.0
30
96
0
111
56
15
3
25
1.54
735442--735490
18
2.7
19
78
9
57
40
16
0
42
1.48
745674--745795
40
3.0
40
100
0
244
35
18
17
29
1.93
747360--747427
32
2.1
32
88
0
100
19
11
23
45
1.83
747397--747453
28
2.0
29
86
3
80
15
15
24
43
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
775937--776033
51
2.0
50
85
6
135
48
16
6
28
1.70
776508--776538
15
2.1
15
100
0
62
48
19
6
25
1.72
781473--781501
15
2.0
15
93
6
51
48
20
3
27
1.66
798915--798968
26
2.1
25
86
3
72
20
7
14
57
1.61
808117--808264
57
2.5
59
82
9
185
30
21
25
22
1.99
808385--808516
67
2.0
67
92
0
219
21
18
31
28
1.97
808644--808707
26
2.4
27
75
17
62
53
6
9
31
1.58
811841--811879
20
2.0
20
90
10
62
15
23
5
56
1.59
812081--812266
50
3.7
50
79
10
177
22
26
22
28
1.99
812089--812322
50
4.6
50
78
6
168
23
26
21
28
1.99
823210--823266
28
2.0
28
100
0
114
64
17
3
14
1.41
823695--823768
34
2.2
32
81
11
85
52
6
0
40
1.28
830005--830044
20
1.9
22
85
10
57
32
7
10
50
1.64
832258--832282
8
3.1
8
100
0
50
76
0
0
24
0.80
832677--832701
8
3.1
8
100
0
50
76
0
0
24
0.80
832100--832938
419
2.0
419
100
0
1678
34
15
9
40
1.79
845923--846204
76
3.7
76
80
4
318
35
18
17
28
1.94
856688--856733
5
9.2
5
82
17
60
17
0
4
78
0.91
856688--856733
19
2.3
20
92
7
76
17
0
4
78
0.91
856691--856735
11
4.4
11
83
13
60
17
0
4
77
0.92
858819--858908
47
1.9
46
97
2
171
45
6
5
42
1.53
866059--866114
21
2.7
21
94
0
94
12
19
7
60
1.55

Tables:   1   2   3

The End!