genome.fa.s1210.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold289
Parameters: 2 7 7 80 10 50 1000
Length:  602941

Tables:   1   2   3   

This is table  2  of  3  ( 266 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240497--240583	28	3.0	28	91	6	147	22	24	24	28	1.99
242532--242566	15	2.3	15	95	0	61	42	17	8	31	1.79
246884--246934	23	2.2	24	82	10	70	39	17	15	27	1.90
250655--250696	20	2.1	20	86	0	57	38	14	16	30	1.89
255131--255338	94	2.2	93	87	1	301	42	5	13	38	1.68
256144--256197	11	5.5	10	75	16	51	33	0	3	62	1.12
256144--256202	29	2.0	29	84	12	77	33	0	5	61	1.18
256152--256197	18	2.4	18	85	7	56	34	0	4	60	1.16
256348--256419	35	2.1	35	97	0	135	54	19	12	13	1.71
258582--258637	17	3.4	17	79	16	55	39	3	1	55	1.28
266066--266152	41	2.1	41	91	0	138	27	16	12	43	1.84
267700--267740	16	2.5	17	80	8	57	68	2	0	29	1.03
270093--270253	83	1.9	83	96	0	295	31	20	21	26	1.98
276998--277325	109	3.0	107	86	2	433	34	17	16	32	1.92
277374--277404	15	2.1	15	93	0	53	64	6	9	19	1.45
283544--283602	4	14.0	4	79	10	64	0	22	3	74	0.96
283544--283602	9	7.0	8	81	7	64	0	22	3	74	0.96
283544--283630	9	9.7	9	74	9	63	1	24	2	72	1.03
283644--283714	34	2.1	34	82	10	83	45	4	1	49	1.30
296144--296213	34	2.2	31	89	7	104	31	22	24	21	1.98
298939--298977	7	5.6	7	100	0	78	28	0	41	30	1.57
301665--301712	25	1.9	25	86	0	69	25	22	4	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305365--305488	62	2.0	63	83	1	160	22	18	29	29	1.97
311476--311528	16	3.3	16	87	10	65	16	18	1	62	1.42
323086--323150	28	2.3	28	97	0	121	32	10	10	46	1.73
325867--325906	21	1.9	21	90	10	64	25	27	25	22	2.00
330919--330993	31	2.4	32	80	6	91	25	16	13	45	1.83
331175--331213	20	1.9	19	90	10	60	66	0	0	33	0.92
331181--331220	10	3.9	11	78	15	50	70	0	0	30	0.88
331175--331218	21	2.1	21	87	8	63	65	0	0	34	0.93
331900--332008	31	3.6	31	68	21	86	38	19	0	42	1.51
334779--334824	24	1.9	24	86	0	65	36	0	0	63	0.95
335665--335704	19	2.1	19	85	0	53	67	10	10	12	1.42
338674--338745	21	3.5	20	75	11	65	43	18	23	15	1.88
338838--338902	24	2.7	24	95	0	112	24	23	9	43	1.83
343073--343108	18	2.0	18	100	0	72	27	11	5	55	1.57
346273--346318	15	3.3	15	70	17	53	50	4	8	36	1.53
346264--346318	27	2.0	27	100	0	110	52	7	7	32	1.56
348359--348432	28	2.7	27	81	10	87	31	13	20	35	1.91
348809--348959	64	2.4	64	95	0	275	30	11	19	38	1.87
357290--357342	13	4.1	13	85	9	81	30	7	24	37	1.83
358345--358461	62	1.9	62	92	0	189	29	10	19	40	1.85
373537--373589	12	4.2	12	77	13	52	45	3	7	43	1.50
390064--390124	32	1.9	32	83	6	79	26	4	8	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390064--390107	16	2.8	16	78	0	52	27	6	9	56	1.55
391928--391984	23	2.4	23	76	2	60	21	3	10	64	1.39
405228--405259	15	2.1	15	94	0	55	18	9	6	65	1.42
426536--426579	9	4.9	9	81	10	54	25	31	0	43	1.55
429676--429701	10	2.6	10	100	0	52	57	0	0	42	0.98
432521--432732	110	1.9	109	85	2	291	29	26	21	22	1.99
432745--432859	40	2.8	41	80	2	133	38	27	20	13	1.90
438224--438263	17	2.3	18	95	4	73	45	5	5	45	1.47
444966--445014	21	2.4	19	78	15	53	65	4	2	28	1.22
445459--446326	229	3.8	227	79	6	876	31	21	21	25	1.98
446135--446493	189	1.9	190	81	7	444	30	19	22	27	1.98
447048--447081	15	2.3	15	89	0	50	8	0	35	55	1.31
449470--449546	37	2.0	38	95	5	138	25	12	20	40	1.89
455240--455299	21	2.9	21	89	0	93	35	16	43	5	1.70
455691--455781	42	2.2	42	86	4	121	37	18	17	26	1.93
458860--459124	27	9.9	27	72	16	151	30	16	24	27	1.97
458923--459011	29	3.2	29	74	16	89	26	15	25	31	1.96
458884--459111	26	8.5	26	72	14	117	30	17	24	28	1.97
458994--459111	52	2.2	54	81	3	132	33	16	21	27	1.95
458843--459139	54	5.5	54	70	12	198	29	17	24	28	1.97
459134--459187	26	2.1	26	92	0	90	37	18	11	33	1.86
460458--460519	6	10.2	6	83	1	70	64	0	19	16	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464593--464669	28	2.5	32	75	20	90	35	22	22	20	1.96
464601--464664	28	2.3	28	91	2	103	31	23	25	20	1.98
464769--464823	26	2.1	26	89	0	83	34	21	21	21	1.97
464997--465137	27	5.3	27	86	5	171	17	16	20	45	1.86
472239--472286	21	2.2	22	78	17	55	33	56	2	8	1.41
472541--472600	27	2.2	27	81	0	75	21	18	26	33	1.96
472541--472647	54	2.0	54	83	3	135	20	18	20	40	1.92
472554--472675	27	4.5	26	88	4	154	17	19	19	43	1.88
472555--472676	54	2.3	54	86	2	174	17	19	18	44	1.87
473531--473569	16	2.4	17	95	4	71	51	33	10	5	1.58
478355--478379	12	2.1	12	100	0	50	48	8	8	36	1.62
478733--478811	38	2.1	38	100	0	158	27	20	15	36	1.92
483596--483684	28	3.2	27	86	0	106	41	16	16	24	1.89
483610--483720	28	3.9	29	83	9	99	39	14	16	29	1.88
483667--483742	28	2.7	28	84	8	84	35	10	14	39	1.81
486265--486312	11	4.2	11	84	10	69	18	22	0	58	1.39
486269--486325	24	2.4	24	100	0	114	21	19	0	59	1.38
486280--486326	13	3.8	13	83	11	71	21	17	0	61	1.34
488546--488638	27	3.4	27	84	0	114	26	27	17	27	1.97
490354--490443	38	2.4	38	98	0	171	27	15	23	33	1.95
492686--492729	21	2.0	22	91	4	72	25	6	4	63	1.38
492720--492744	11	2.3	11	100	0	50	40	0	8	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511883--511961	39	2.0	39	92	0	131	35	20	8	35	1.84
511923--512487	292	1.9	292	98	0	1094	31	14	9	43	1.78
513614--513649	10	3.6	10	92	0	63	52	11	0	36	1.37
513612--513658	20	2.4	20	78	3	51	57	10	0	31	1.33
526392--526426	5	7.0	5	93	0	61	82	0	17	0	0.66
528473--528506	14	2.5	13	86	9	50	2	14	0	82	0.79
533748--533961	114	1.9	114	79	7	247	30	17	20	31	1.96
534840--534909	28	2.5	28	90	9	108	15	0	47	37	1.46
534891--535016	63	2.0	63	96	0	234	23	3	32	40	1.73
534882--535044	63	2.7	61	85	6	197	23	3	31	40	1.72
537360--537390	9	3.4	9	100	0	62	0	32	22	45	1.53
538468--538517	17	3.2	17	78	21	72	36	6	6	52	1.51
538486--538513	13	2.2	13	100	0	56	39	7	7	46	1.59
538509--538547	16	2.5	15	88	8	60	41	0	5	53	1.23
541576--541658	30	2.8	30	79	0	103	24	24	33	18	1.96
548483--548558	33	2.3	33	84	6	93	27	9	15	47	1.76
550611--550650	19	2.1	19	95	0	71	47	7	45	0	1.31
552711--552834	43	2.9	43	82	13	157	29	29	18	21	1.97
556661--556707	24	2.0	24	83	8	60	12	8	6	72	1.27
559478--559519	17	2.4	17	85	14	59	83	0	11	4	0.79
560357--561396	44	23.2	44	71	9	550	31	21	19	27	1.97
560345--561420	179	6.0	179	93	0	1742	31	21	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568423--568480	30	1.9	30	89	0	89	10	27	41	20	1.85
570594--570645	26	2.0	26	88	0	77	23	25	19	32	1.97
572709--572744	14	2.5	15	91	8	58	58	8	5	27	1.50
574466--574979	51	10.9	48	71	16	294	28	18	17	35	1.94
574635--575159	45	11.5	44	72	9	223	30	18	16	34	1.93
574472--574890	95	4.4	95	84	3	504	28	18	17	34	1.94
574473--574979	190	2.7	190	80	5	557	29	18	17	35	1.94
574716--575157	89	4.9	88	80	5	354	30	19	15	34	1.92
574720--575098	134	2.8	135	78	7	340	30	19	14	35	1.92
575592--575642	22	2.3	22	86	3	66	47	15	9	27	1.77

Tables:   1   2   3