genome.fa.s1304.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold355
Parameters: 2 7 7 80 10 50 1000
Length:  482196

Tables:   1   2   3   

This is table  2  of  3  ( 253 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239569--239672	51	2.0	51	90	0	163	34	11	14	39	1.82
240164--240201	14	2.7	14	84	8	51	68	7	0	23	1.16
249477--249527	19	2.7	18	85	8	66	31	1	1	64	1.15
249555--249636	26	3.2	26	60	13	60	45	8	10	35	1.70
249538--249643	52	2.0	53	98	1	205	45	7	9	37	1.65
253644--253706	20	3.1	20	75	20	60	47	1	1	49	1.20
253644--253716	11	6.8	11	78	13	64	47	2	1	47	1.24
256091--256159	31	2.2	31	84	5	86	31	4	5	57	1.42
259367--259405	21	1.9	21	84	5	53	25	0	5	69	1.09
259574--259611	14	2.7	15	84	12	53	60	2	0	36	1.11
262223--262263	21	2.0	21	85	9	57	26	19	14	39	1.90
262703--262746	9	4.9	9	81	10	54	36	9	2	52	1.46
270112--270145	16	2.1	16	88	0	50	52	0	0	47	1.00
281217--281275	29	2.0	30	86	3	84	54	15	3	27	1.57
283490--283546	5	10.6	5	78	14	60	19	19	0	61	1.35
283482--283529	22	2.1	23	92	3	80	16	14	0	68	1.21
283490--283546	27	2.1	27	90	6	89	19	19	0	61	1.35
283490--283546	11	5.3	10	80	14	60	19	19	0	61	1.35
283493--283546	22	2.5	22	87	0	72	20	20	0	59	1.38
283553--283627	18	4.1	17	79	14	78	20	12	2	65	1.37
284095--284170	5	14.6	5	75	9	64	19	19	1	59	1.45
284166--284354	21	8.2	21	67	23	89	24	13	0	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284158--284423	94	2.8	89	85	9	327	23	15	0	61	1.34
284160--284453	48	6.1	48	85	8	386	23	15	0	60	1.34
284161--284453	95	3.1	97	87	7	404	23	15	0	60	1.35
284160--284437	22	11.7	22	70	21	138	24	14	0	61	1.34
284187--284460	73	3.8	72	71	16	217	24	14	0	60	1.34
284366--284448	25	3.2	25	68	15	62	20	19	0	60	1.37
287547--287578	16	2.0	16	100	0	64	25	6	6	62	1.42
287571--287814	122	2.0	123	82	7	300	31	20	16	32	1.94
287826--288128	107	2.8	106	85	5	374	33	20	17	29	1.95
294735--294788	22	2.6	21	85	8	74	38	1	1	57	1.20
295644--295676	17	2.0	17	94	5	59	60	0	0	39	0.97
296021--296108	44	2.0	46	80	17	105	30	7	4	56	1.48
298177--298268	36	2.6	34	77	12	89	58	5	4	31	1.40
302162--302196	16	2.1	16	94	5	61	80	0	20	0	0.72
304392--304445	25	2.2	25	86	6	74	42	0	1	55	1.10
309344--309373	15	2.0	15	93	0	51	90	0	0	10	0.47
309831--309891	17	3.5	18	76	12	65	60	1	1	36	1.16
311487--311516	15	2.0	15	93	0	51	90	0	0	10	0.47
311974--312034	17	3.5	18	76	12	65	60	1	1	36	1.16
314795--314833	6	6.3	6	82	5	51	38	2	0	58	1.12
317738--317900	82	2.0	81	83	4	202	30	19	17	32	1.95
322855--322910	19	2.9	19	78	5	67	7	16	25	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324632--324752	64	1.9	63	83	5	154	23	31	22	22	1.98
325916--326153	64	3.7	64	95	0	422	18	30	22	28	1.97
330592--330691	49	2.0	49	100	0	200	51	8	17	24	1.72
334656--334706	21	2.4	21	96	0	93	47	5	17	29	1.71
338159--338198	6	6.3	6	86	11	53	82	0	17	0	0.67
338159--338198	13	3.2	12	89	7	53	82	0	17	0	0.67
338159--338198	20	2.1	19	90	4	62	82	0	17	0	0.67
338573--338784	64	3.3	64	85	0	289	28	27	19	23	1.98
341007--341044	16	2.4	16	82	8	51	68	0	10	21	1.19
341484--341525	21	2.0	21	95	0	75	50	0	21	28	1.49
341824--341974	79	1.9	79	94	0	266	39	0	20	39	1.58
349151--349177	2	13.5	2	100	0	54	51	0	0	48	1.00
349660--350011	162	2.2	162	93	0	605	27	20	16	35	1.94
350788--350836	21	2.3	22	82	3	55	75	6	0	18	1.00
354767--354811	19	2.4	19	88	7	65	60	0	2	37	1.09
356177--356226	16	3.2	16	82	2	57	32	6	0	62	1.20
358212--358366	43	3.6	42	79	4	150	23	15	27	33	1.95
358212--358361	42	3.5	42	79	6	133	24	16	26	33	1.95
359724--359754	2	15.5	2	100	0	62	48	0	0	51	1.00
361223--361281	15	3.9	15	82	14	61	77	0	1	20	0.85
361234--361281	5	9.6	5	88	6	71	81	0	0	18	0.70
361242--361298	27	2.1	27	84	12	73	78	3	0	17	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361187--361282	11	9.1	11	75	4	56	73	2	3	20	1.07
361211--361285	11	7.3	10	70	20	57	76	0	4	20	0.95
361223--361288	20	3.3	19	79	12	62	77	0	1	21	0.85
361234--361288	16	3.1	17	77	17	58	80	0	0	20	0.72
361942--362024	3	27.7	3	97	0	157	68	0	31	0	0.90
362229--362711	89	5.4	89	81	2	416	28	19	17	34	1.95
362229--362710	45	10.9	44	80	3	437	28	19	17	34	1.95
364262--364286	13	1.9	13	100	0	50	32	4	24	40	1.73
368306--368335	16	1.9	15	93	6	51	30	23	0	46	1.52
371645--371688	23	1.9	23	100	0	88	29	29	22	18	1.97
371914--371952	18	2.2	17	86	13	53	46	20	0	33	1.51
376153--376281	43	3.0	43	80	13	165	31	28	18	20	1.97
380090--380128	20	1.9	20	89	5	60	64	0	7	28	1.21
380770--380826	29	2.0	29	96	0	105	38	14	24	22	1.91
384217--384725	162	3.1	162	94	0	883	26	19	17	36	1.94
395054--395110	28	2.0	28	96	0	105	59	7	15	17	1.57
395453--395496	14	3.1	14	83	6	52	13	18	2	65	1.36
395470--395497	14	2.0	14	100	0	56	21	14	0	64	1.29
399508--399620	30	3.8	30	85	3	140	30	20	25	23	1.99
399800--400002	32	6.4	32	90	0	291	37	20	21	20	1.95
400030--400090	27	2.3	26	81	15	72	34	22	22	19	1.97
400153--400230	24	3.2	24	87	3	104	52	21	5	20	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400166--400263	24	4.1	24	76	11	94	51	20	5	23	1.67
400335--400478	27	5.4	27	82	1	166	25	22	18	34	1.96
403917--403960	22	2.0	22	100	0	88	31	13	9	45	1.75
406771--406817	18	2.7	17	80	6	58	40	4	17	38	1.69
408948--409027	39	2.1	39	81	11	94	27	3	2	66	1.22
409065--409127	20	2.9	22	79	11	76	26	0	7	65	1.20
409187--409211	6	4.2	6	100	0	50	32	0	0	68	0.90
409381--409423	20	2.1	21	86	4	61	13	4	2	79	1.00
414653--414714	20	2.9	22	79	13	76	27	0	8	64	1.21
414776--414818	12	3.6	12	83	0	50	39	0	4	55	1.20
414840--414873	15	2.4	14	85	9	50	11	8	0	79	0.94
414974--415016	20	2.1	21	86	4	61	13	4	2	79	1.00
416723--416755	14	2.3	15	89	5	50	27	12	33	27	1.92
418101--418680	44	13.2	43	64	14	192	26	26	24	22	2.00
418088--418852	88	8.7	88	84	2	908	27	24	24	23	2.00
418690--418828	44	3.1	45	66	4	111	25	20	28	25	1.99
419032--419135	44	2.4	44	81	3	120	29	18	24	27	1.98
419700--419751	21	2.6	20	93	6	88	36	11	15	36	1.84
419709--419775	24	3.0	24	79	14	63	37	7	17	37	1.79
420047--420132	21	4.2	20	78	11	84	29	1	4	65	1.20
420094--420135	3	14.0	3	94	0	75	30	0	2	66	1.04
423088--423153	21	3.2	20	76	18	64	69	9	1	19	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423683--423733	25	2.2	23	89	10	77	39	7	3	49	1.51
424917--424951	10	3.6	10	88	7	54	0	11	0	88	0.51
424917--424954	12	3.5	11	86	10	51	0	10	0	89	0.49
424917--424954	16	2.4	16	87	12	60	0	10	0	89	0.49
427881--428016	52	2.6	50	85	12	184	30	9	20	39	1.84
429690--429724	18	1.9	18	88	0	52	57	5	0	37	1.23
431796--431899	49	2.1	49	92	0	172	30	8	9	50	1.65
433203--433232	15	1.9	16	93	6	53	43	0	6	50	1.28
433224--433258	18	2.0	17	88	5	52	45	0	0	54	0.99
433209--433391	59	3.0	61	67	15	173	44	1	3	50	1.30

Tables:   1   2   3