genome.fa.s1419.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold200
Parameters: 2 7 7 80 10 50 1000
Length:  883113

Tables:   1   2   3   

This is table  1  of  3  ( 330 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297--329	14	2.5	14	90	9	52	18	15	0	66	1.25
12346--12718	186	2.0	186	92	0	620	24	27	17	30	1.97
13781--13825	23	1.9	24	90	4	74	48	6	26	17	1.72
16562--16622	31	2.0	31	93	0	104	22	11	29	36	1.90
21560--21713	43	3.6	44	78	6	181	37	25	14	23	1.92
21525--21749	42	5.3	42	76	8	233	35	24	16	23	1.95
21525--21749	85	2.7	85	89	0	344	35	24	16	23	1.95
21862--21912	19	2.6	20	73	14	52	33	19	0	47	1.50
27078--27102	11	2.3	11	100	0	50	72	0	16	12	1.13
28282--28498	40	5.4	40	86	1	267	22	30	16	30	1.95
33210--33426	40	5.4	40	86	1	267	22	30	16	30	1.95
38882--38932	26	2.0	26	84	7	68	17	23	31	27	1.97
38911--39273	43	8.6	43	78	10	304	24	16	23	34	1.95
38908--39193	85	3.4	85	87	4	371	24	16	24	34	1.95
38911--39273	128	2.8	126	86	5	450	24	16	23	34	1.95
56729--56812	19	4.4	18	82	8	80	38	8	17	35	1.80
56731--56805	19	3.8	19	91	6	123	37	9	16	37	1.80
56732--56794	21	3.1	21	95	4	112	38	9	14	38	1.78
56744--56828	21	4.0	22	79	14	81	37	7	16	38	1.76
56794--56838	23	2.0	23	86	4	65	33	4	15	46	1.66
61689--61727	6	6.7	6	97	2	71	87	0	12	0	0.55
62921--63559	44	14.5	45	78	4	624	28	15	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62921--63559	132	4.8	132	89	2	797	28	15	25	30	1.96
63680--63885	44	4.7	44	80	5	238	25	19	26	28	1.99
64192--64434	128	1.9	129	82	2	310	30	18	20	30	1.96
64725--64799	19	3.8	19	91	6	123	37	9	16	37	1.80
64726--64788	21	3.1	21	95	4	112	38	9	14	38	1.78
82966--82996	15	2.1	15	93	0	53	29	29	19	22	1.98
91598--91672	25	3.2	25	61	24	63	46	21	6	25	1.75
91588--91673	45	1.9	45	100	0	172	45	24	5	24	1.75
96488--96617	43	3.0	43	82	4	165	21	32	22	23	1.98
96496--96629	42	3.2	42	85	1	178	20	32	23	23	1.98
105835--105887	26	2.0	26	85	0	70	33	20	26	18	1.96
105881--105945	22	3.0	22	79	0	67	44	15	20	20	1.86
105937--106107	32	5.4	32	87	0	227	38	21	19	20	1.94
106315--106735	27	15.6	27	87	0	563	23	22	20	33	1.97
108726--108886	43	3.8	43	76	7	159	26	16	27	29	1.97
110021--110057	18	2.1	18	100	0	74	37	0	24	37	1.56
111902--111948	24	2.0	24	83	8	60	21	23	25	29	1.99
121670--121785	57	2.0	58	98	1	225	37	3	15	43	1.64
128968--129155	51	3.7	51	80	10	206	28	15	26	29	1.96
128968--129160	101	1.9	102	84	5	257	28	15	26	29	1.96
135677--136016	51	6.7	51	77	10	340	28	15	25	30	1.96
135833--135915	26	3.2	26	67	21	75	31	12	24	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135677--136021	101	3.4	100	79	7	367	28	15	25	29	1.96
135677--136031	152	2.3	153	96	2	651	29	14	25	30	1.95
145373--145420	25	1.9	25	95	0	87	31	10	16	41	1.82
154379--154412	16	2.2	15	89	5	50	44	0	0	55	0.99
156622--156715	48	2.0	48	97	0	179	20	13	21	44	1.86
156833--156885	18	2.9	18	80	2	61	41	45	1	11	1.51
156983--157049	9	7.4	9	91	0	107	25	11	20	41	1.87
162358--162519	26	6.2	26	81	5	175	41	15	14	29	1.86
162358--162530	78	2.2	78	87	2	240	41	16	13	28	1.87
162358--162530	52	3.3	53	80	7	203	41	16	13	28	1.87
166799--166851	11	4.8	11	80	0	52	26	45	7	20	1.78
175434--175503	30	2.3	29	78	9	70	24	31	11	32	1.91
190431--190491	31	2.0	30	84	9	79	36	14	6	42	1.72
190635--190684	25	2.0	25	84	7	66	26	20	22	32	1.98
204755--204945	95	2.0	96	98	1	375	33	10	10	45	1.73
205362--205409	21	2.2	23	85	7	64	58	6	0	35	1.23
205447--205496	20	2.5	21	83	9	68	46	4	0	50	1.20
213140--213180	22	1.9	21	85	5	55	36	31	0	31	1.58
215332--215388	13	4.4	13	72	0	51	21	26	22	29	1.99
219389--219536	72	2.0	73	90	1	235	40	12	14	32	1.83
221492--221536	22	2.0	22	95	0	81	40	11	17	31	1.85
222203--222273	30	2.5	27	80	15	72	46	7	0	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242409--242512	29	3.6	29	72	6	93	35	20	18	25	1.95
242451--242512	30	2.1	29	84	3	79	37	20	16	25	1.93
242536--242642	52	2.1	52	98	0	205	20	30	13	35	1.91
245806--246048	50	4.8	50	86	0	315	21	29	21	27	1.99
250656--250691	5	6.8	5	87	12	54	77	0	0	22	0.76
255288--255333	22	2.1	22	100	0	92	45	4	4	45	1.43
255324--255361	15	2.5	15	95	0	67	44	15	0	39	1.47
257633--257761	43	3.0	42	78	4	132	34	27	15	22	1.94
267756--267985	114	2.0	115	99	0	453	41	9	10	38	1.72
270599--270631	17	1.9	17	93	0	57	48	21	18	12	1.80
274821--274892	35	2.1	35	84	5	92	37	8	2	51	1.47
275049--275091	22	1.9	21	86	13	59	25	2	0	72	0.97
275231--275336	54	2.0	54	96	0	194	40	9	8	41	1.68
279753--279958	111	1.9	111	90	0	331	29	15	23	31	1.95
280670--280699	15	2.0	15	93	0	51	50	6	6	36	1.55
282726--282779	28	2.0	26	89	7	81	50	0	1	48	1.11
283383--283423	22	1.9	22	85	5	57	53	0	0	46	1.00
289564--289624	21	2.9	21	85	4	70	21	22	40	14	1.90
295006--295060	27	2.0	27	89	0	83	41	1	12	43	1.53
296707--297099	54	7.3	54	81	2	380	26	20	16	36	1.94
296707--297097	215	1.8	216	82	2	500	26	20	16	36	1.93
296707--297097	108	3.6	107	81	6	432	26	20	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297135--297310	23	7.6	23	74	10	153	38	18	10	32	1.85
297161--297283	47	2.6	47	86	0	174	40	17	8	33	1.79
297138--297336	70	2.9	70	79	9	178	38	18	10	33	1.84
297300--297409	24	4.6	24	78	4	114	36	16	11	35	1.85
297246--297419	72	2.5	69	80	4	197	36	17	10	35	1.84
302102--302262	41	3.9	38	73	16	124	35	26	13	24	1.92
305825--305998	93	1.9	94	85	3	244	44	8	16	31	1.77
306859--306893	14	2.5	14	90	0	52	51	5	8	34	1.56
307690--307730	18	2.3	18	82	0	55	17	4	0	78	0.93
315121--315148	3	9.3	3	100	0	56	67	0	0	32	0.91
315207--315238	3	10.7	3	100	0	64	65	0	0	34	0.93
315703--315916	17	12.5	16	71	18	123	43	11	12	32	1.79
315735--315976	17	13.9	18	71	14	161	44	10	13	31	1.78
315907--315970	18	3.6	17	73	14	58	43	4	14	37	1.66
316259--316301	16	2.8	16	82	3	52	67	0	0	32	0.91
316484--316539	20	2.7	21	84	10	71	0	21	0	78	0.75
316493--316533	17	2.5	16	84	7	55	0	24	0	75	0.80
316538--316588	17	2.9	17	77	13	50	9	27	39	23	1.86
316593--316629	19	1.9	19	88	0	56	2	27	40	29	1.70
316802--316829	11	2.5	11	100	0	56	0	42	0	57	0.99
316823--316868	7	7.0	7	80	14	62	0	26	0	73	0.83
316823--316881	4	16.0	4	76	16	56	1	28	0	69	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317363--317459	30	3.2	29	76	11	97	41	3	19	36	1.67
317676--318554	79	11.3	78	83	6	914	36	18	16	28	1.93
317676--318541	155	5.6	157	82	6	903	36	18	16	28	1.93
317717--318554	234	3.6	234	82	5	923	36	19	16	28	1.93
319404--319466	29	2.1	31	82	5	76	4	4	6	84	0.88
321262--321297	18	1.9	19	88	5	56	61	16	11	11	1.57
321446--322075	107	5.9	107	99	0	1251	52	12	18	16	1.75
323965--323993	8	3.6	8	100	0	58	10	27	10	51	1.68
329550--329582	16	2.1	16	100	0	66	36	18	39	6	1.75
330414--330438	11	2.3	11	100	0	50	28	12	32	28	1.92

Tables:   1   2   3