genome.fa.s1419.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold200
Parameters: 2 7 7 80 10 50 1000
Length:  883113

Tables:   1   2   3   

This is table  3  of  3  ( 330 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609045--609171	39	3.1	41	80	6	118	25	25	28	20	1.99
620503--620558	21	2.7	21	85	0	76	26	7	37	28	1.83
620782--620815	17	1.9	18	88	5	52	50	2	2	44	1.32
624382--624482	31	3.3	31	78	10	125	25	19	15	38	1.92
624999--625070	19	3.9	19	85	5	103	50	0	8	41	1.33
624999--625069	37	1.9	37	94	0	124	50	0	8	40	1.33
625095--625191	27	3.5	27	92	5	151	48	0	12	39	1.41
628947--629075	40	3.2	40	83	4	145	31	22	24	22	1.99
628947--629099	40	3.8	41	77	10	138	32	21	22	23	1.98
629084--629153	25	2.8	25	97	0	131	50	24	15	10	1.75
629172--629449	41	6.8	41	93	2	452	25	18	25	30	1.98
629760--629824	14	4.6	14	80	0	58	24	0	40	35	1.56
629780--629842	29	2.2	28	82	2	72	26	1	36	34	1.67
629841--630017	95	1.9	95	87	2	266	24	0	29	45	1.58
629991--630042	21	2.4	22	80	6	70	21	0	40	38	1.53
631793--631836	21	2.0	21	86	8	61	45	38	0	15	1.47
632707--633059	43	8.3	43	87	3	439	26	18	30	25	1.98
633367--633406	19	2.1	19	86	9	55	60	12	5	22	1.52
637351--637413	31	2.1	31	96	3	119	52	12	6	28	1.64
649385--649421	17	2.2	17	100	0	74	45	0	16	37	1.47
650790--650976	87	2.1	87	86	2	259	32	26	25	16	1.96
652892--652943	21	2.5	21	93	0	86	36	25	17	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653597--653621	6	4.2	6	100	0	50	52	0	0	48	1.00
655726--655840	17	6.4	18	71	18	87	68	0	30	0	0.95
655740--655836	10	9.1	10	71	14	52	70	0	29	0	0.88
655748--655837	33	2.8	31	79	12	101	68	0	31	0	0.89
655777--655877	30	3.4	30	73	10	91	66	0	33	0	0.92
655758--655891	60	2.2	58	81	7	153	67	0	32	0	0.91
656614--656669	27	2.1	27	89	0	85	46	14	30	8	1.75
659224--659273	25	2.0	25	96	0	91	34	4	2	60	1.27
662310--662345	3	12.0	3	93	0	63	63	33	2	0	1.08
667001--667038	9	4.3	9	90	3	60	50	7	7	34	1.61
667116--667187	20	3.7	19	81	7	74	55	5	0	38	1.23
667117--667193	19	4.1	19	80	14	79	53	5	0	41	1.23
667527--667556	15	2.0	15	93	0	51	26	23	13	36	1.92
668650--668685	9	3.8	9	92	7	54	55	0	8	36	1.30
671476--671664	25	7.6	24	86	5	100	31	20	25	23	1.98
671480--671669	50	3.8	50	84	4	226	31	20	25	22	1.98
671499--671669	75	2.3	73	87	3	234	32	19	26	22	1.97
679337--679446	50	2.2	51	83	4	136	37	15	22	24	1.93
679337--679448	25	4.5	25	83	4	120	37	15	22	25	1.93
687536--687605	28	2.5	28	90	0	104	37	5	7	50	1.54
695932--696226	27	10.9	27	90	0	401	39	18	15	25	1.91
702972--703064	26	3.8	24	77	13	82	25	24	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702979--703040	23	2.5	26	82	15	78	29	24	17	29	1.97
712324--712669	50	6.6	54	81	9	314	26	20	28	23	1.99
712324--712713	50	7.6	49	77	9	175	27	20	28	23	1.99
712324--712669	99	3.4	99	78	8	300	26	20	28	23	1.99
712386--712720	149	2.2	151	94	3	584	27	20	28	23	1.99
712922--712970	20	2.5	20	81	15	66	57	6	24	12	1.58
717408--717448	20	2.0	20	100	0	82	34	4	19	41	1.73
734684--734789	36	2.9	36	82	0	140	23	24	15	36	1.93
747341--747376	16	2.2	16	90	0	54	50	0	33	16	1.46
747545--747587	22	2.0	22	86	9	61	6	30	0	62	1.21
749775--749825	3	17.0	3	100	0	102	33	0	0	66	0.92
749926--749974	24	2.0	24	84	7	64	22	8	0	69	1.14
751188--751248	31	1.9	32	83	6	79	36	11	13	39	1.80
751662--751699	18	2.1	18	90	0	58	44	0	5	50	1.24
757242--757680	40	10.9	40	89	1	317	33	18	30	16	1.93
757296--757600	20	15.2	20	66	9	111	34	18	30	16	1.94
757294--757680	40	9.7	40	91	0	567	34	18	30	17	1.93
757604--757662	20	3.0	20	69	0	64	37	13	32	16	1.88
762362--762442	38	2.2	37	80	14	87	66	3	2	27	1.21
762686--762733	25	2.0	25	91	4	80	35	10	8	45	1.68
763230--763275	24	1.9	24	86	0	65	15	4	30	50	1.63
767309--767469	34	4.7	34	79	10	159	32	13	14	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
767329--767469	68	2.1	68	83	2	185	32	13	13	40	1.83
767589--767706	44	2.7	44	82	0	146	25	19	20	34	1.96
772386--772503	59	2.0	59	98	0	227	31	27	8	32	1.87
777444--777679	116	2.0	117	92	0	393	40	27	6	25	1.79
780694--780799	29	3.6	29	74	6	72	32	10	23	33	1.89
781455--782253	400	2.0	401	99	0	1591	38	13	19	28	1.89
789579--791559	998	2.0	998	98	0	3800	37	10	15	36	1.82
803343--803436	44	2.1	45	92	4	163	35	15	13	35	1.88
826050--826099	22	2.3	22	82	6	66	24	0	40	36	1.55
826073--826379	7	43.9	7	66	14	80	18	0	39	41	1.58
826051--826148	21	4.6	21	73	6	63	20	0	42	36	1.52
826228--826296	36	1.9	35	88	2	102	21	0	36	42	1.53
826213--826271	22	2.7	22	82	7	68	20	0	40	38	1.53
828734--828841	29	3.9	29	79	11	127	37	2	8	51	1.46
828758--828805	25	2.0	25	91	4	80	37	0	12	50	1.41
831909--832156	122	2.0	123	98	1	480	26	18	20	35	1.95
871269--871321	19	2.7	19	79	2	61	67	3	1	26	1.17
871262--871309	25	1.9	25	82	0	60	72	2	2	22	1.05
872617--872681	31	2.1	31	82	5	78	50	4	0	44	1.22
873030--873112	43	1.9	43	85	0	112	31	24	22	21	1.98
873955--874272	45	7.0	45	80	2	289	23	22	12	41	1.87
880813--880955	45	3.2	45	84	2	169	23	19	10	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
880934--881006	23	3.2	23	67	18	62	15	17	15	52	1.76
880846--881016	45	3.8	45	82	4	148	20	17	11	50	1.77

Tables:   1   2   3

The End!