Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: scaffold200 Parameters: 2 7 7 80 10 50 1000 Length: 883113

Tables:   1   2   3   

This is table  2  of  3  ( 330 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
331952--332177
17
12.8
18
73
13
177
45
11
13
29
1.79
331952--332203
35
7.2
34
73
12
163
44
11
13
31
1.79
331953--332202
55
4.8
50
72
15
159
44
11
13
31
1.79
331920--332201
17
16.2
18
71
18
147
43
11
13
31
1.79
332704--332769
7
9.6
7
71
15
57
1
19
0
78
0.82
332708--332766
6
9.8
6
77
15
52
1
18
0
79
0.81
332997--333058
7
9.0
7
75
3
54
0
25
0
74
0.82
332997--333059
14
4.6
14
80
4
65
0
26
0
73
0.84
333165--333212
25
2.0
24
91
4
78
0
25
2
72
0.95
333166--333214
8
5.8
9
79
11
59
0
22
2
75
0.90
339225--339381
42
3.7
42
83
3
154
14
19
19
46
1.84
339303--339363
21
2.9
21
72
0
59
13
16
21
49
1.79
342398--342438
21
2.0
21
90
0
64
39
0
12
48
1.41
347788--347959
92
1.9
92
81
4
213
24
17
23
34
1.96
351374--351633
33
7.7
33
67
25
143
35
25
19
19
1.96
351404--351456
27
2.0
27
100
0
106
26
30
24
18
1.98
351328--351634
103
3.0
103
89
2
458
34
25
19
20
1.96
358325--358400
27
2.8
27
95
0
134
30
31
21
17
1.96
358281--358478
97
2.0
100
85
7
269
32
26
19
21
1.97
372489--372542
5
10.8
5
95
0
81
40
5
18
35
1.74
372574--372605
5
6.4
5
92
0
55
40
3
21
34
1.69
373124--373256
66
2.0
66
86
4
189
48
18
23
9
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
378261--378371
51
2.2
51
85
8
154
27
18
8
45
1.78
380063--380168
41
2.6
41
93
0
185
30
24
21
23
1.99
386449--386478
13
2.2
14
94
5
53
6
6
16
70
1.31
388664--388694
11
2.7
11
95
5
53
80
6
0
12
0.89
397114--397155
21
2.0
21
100
0
84
42
9
4
42
1.58
399379--399450
26
3.0
23
77
18
69
37
18
22
22
1.94
401065--401139
19
3.8
19
91
6
123
37
9
16
37
1.80
401066--401128
21
3.1
21
95
4
112
38
9
14
38
1.78
403881--403923
19
2.3
18
84
15
52
20
23
13
41
1.88
407115--407770
132
5.0
132
96
0
1154
27
15
26
29
1.96
407115--407844
264
2.8
259
84
6
957
26
17
26
28
1.98
407764--407982
88
2.5
88
93
0
375
26
29
24
18
1.98
408544--408568
11
2.3
11
100
0
50
8
16
32
44
1.76
408557--408709
40
3.8
40
80
6
150
35
22
21
20
1.96
408744--408864
41
3.0
41
92
0
197
19
23
27
29
1.98
409232--409266
14
2.5
14
85
0
52
22
0
28
48
1.51
409315--409347
14
2.3
15
94
5
59
30
0
33
36
1.58
409402--409444
21
2.0
22
95
4
79
20
0
41
37
1.53
409404--409573
80
2.1
85
86
5
242
27
1
29
41
1.63
409563--409621
7
8.4
7
82
0
55
25
0
42
32
1.55
414733--415002
42
6.4
42
90
2
380
17
20
34
28
1.95
415094--415138
22
2.1
21
91
4
72
42
28
17
11
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
415153--415250
44
2.2
44
80
5
110
31
18
23
26
1.97
415670--415712
19
2.3
19
95
0
77
37
6
16
39
1.75
416182--416234
27
2.0
27
100
0
106
24
37
11
26
1.89
419415--419443
14
2.0
15
93
6
51
27
6
20
44
1.77
420589--420712
43
2.9
43
79
11
128
20
20
27
31
1.98
429015--429101
45
1.9
45
88
0
129
22
16
27
33
1.95
431734--431789
29
1.9
29
85
0
76
39
17
16
26
1.91
432709--432761
21
2.5
22
78
3
54
32
5
7
54
1.52
435010--435118
48
2.3
48
84
6
132
46
6
10
36
1.63
441995--442062
32
2.1
33
83
8
86
14
14
22
48
1.80
443670--443732
29
2.2
28
82
2
72
30
12
14
42
1.82
444005--444074
22
3.2
22
93
0
122
31
30
0
38
1.58
444046--444104
30
2.0
30
93
0
100
30
35
0
33
1.58
444024--444126
52
2.0
51
86
5
145
33
33
0
33
1.58
444076--444117
22
1.9
22
90
0
66
33
33
0
33
1.58
444162--444223
29
2.1
29
82
5
72
40
0
1
58
1.08
453545--453576
16
1.9
17
93
6
57
87
3
9
0
0.64
453527--453602
35
2.1
36
85
2
100
80
6
7
5
1.03
453557--453623
30
2.3
28
87
10
91
74
5
8
10
1.21
454483--454513
7
4.3
7
95
4
53
74
0
12
12
1.08
455249--455280
14
2.3
14
94
0
55
37
18
15
28
1.92
455775--456047
128
2.1
128
85
4
354
31
19
23
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
455995--456198
44
4.6
44
78
9
218
29
18
25
25
1.98
456211--456823
100
6.1
100
89
0
821
33
24
18
23
1.97
456211--456830
50
12.4
50
70
2
384
33
24
18
23
1.97
457423--457456
16
2.1
16
88
0
50
64
5
23
5
1.38
458435--458459
4
6.2
4
100
0
50
24
0
0
76
0.80
462795--462831
19
2.0
19
89
5
58
48
2
0
48
1.15
466981--467022
19
2.1
20
82
8
50
45
7
2
45
1.44
473212--473303
26
3.3
26
71
21
87
25
9
31
33
1.88
473200--473334
58
2.3
57
89
1
207
28
8
31
31
1.87
473227--473426
31
6.7
30
69
16
94
29
12
29
29
1.93
477609--477720
51
2.2
52
80
4
138
41
8
19
30
1.80
478675--478844
85
2.0
85
95
0
304
19
25
21
34
1.96
482045--482083
16
2.2
17
86
13
53
69
0
17
12
1.19
485638--485663
4
6.5
4
100
0
52
50
0
0
50
1.00
485887--485944
30
1.9
31
85
3
82
29
18
3
48
1.65
486087--486135
23
2.1
23
88
0
71
26
6
22
44
1.76
505249--505280
15
2.2
15
94
5
57
65
0
3
31
1.08
524164--524222
31
1.9
31
89
6
93
47
8
5
38
1.56
528867--528983
41
2.9
41
92
2
182
23
20
24
31
1.98
529143--529228
2
43.0
2
100
0
172
0
0
50
50
1.00
539591--539634
20
2.1
21
88
12
65
2
25
0
72
0.96
539598--539646
20
2.5
19
81
15
55
2
20
2
75
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
540192--540316
63
2.0
63
88
0
187
29
21
24
24
1.99
541984--542066
43
1.9
43
92
4
141
33
7
16
42
1.76
549261--549375
54
2.1
54
82
3
142
24
26
25
23
2.00
550292--550374
37
2.2
37
86
0
121
40
30
10
18
1.84
552974--553012
6
6.2
6
82
11
51
51
15
17
15
1.77
552973--553013
13
3.2
13
92
0
73
53
14
17
14
1.73
553308--553337
12
2.5
12
94
0
51
33
46
20
0
1.51
555211--555534
161
2.0
162
99
0
641
45
7
11
34
1.69
557006--557049
23
1.9
22
82
17
54
36
25
0
38
1.56
557094--557182
45
2.0
45
93
0
151
33
24
16
24
1.96
557193--557379
51
3.7
50
82
4
232
29
29
17
22
1.97
557189--557375
101
1.8
101
89
3
295
30
29
17
22
1.97
557182--557409
101
2.3
101
79
7
266
29
29
15
25
1.96
569076--569106
15
2.0
16
93
6
55
25
3
0
70
1.02
573245--574312
533
2.0
533
100
0
2136
39
9
10
40
1.72
573929--575141
606
2.0
606
100
0
2426
39
8
13
39
1.74
578236--578303
9
7.4
9
83
9
93
22
10
27
39
1.86
585974--586007
2
17.0
2
100
0
68
50
0
0
50
1.00
587020--587072
13
4.1
13
90
0
70
26
3
9
60
1.45
589536--589822
142
2.0
142
97
0
538
46
5
17
31
1.71
592303--592334
9
3.4
9
91
8
55
65
0
0
34
0.93
592305--592333
10
3.0
10
95
5
51
62
0
0
37
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
593835--594178
102
3.4
100
85
4
431
29
16
25
29
1.97
593835--594172
51
6.7
50
79
6
349
29
16
25
28
1.97
595757--595832
37
2.1
36
83
11
93
40
2
2
53
1.28
599123--599186
31
2.1
31
100
0
128
43
6
18
31
1.75
600026--600059
18
1.9
17
88
5
50
58
20
0
20
1.39
600278--600382
55
1.9
55
86
0
147
22
28
23
24
1.99
600281--600398
55
2.1
55
82
0
137
22
29
23
24
1.99
602594--602619
9
2.9
9
100
0
52
11
30
11
46
1.76
607874--607920
21
2.2
21
92
0
76
46
21
8
23
1.78
607874--607929
21
2.7
21
86
5
69
39
25
8
26
1.85

Tables:   1   2   3