Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold40
Parameters: 2 7 7 80 10 50 1000
Length:  1915636

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 644 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1797328--1797384
25
2.2
26
90
6
98
36
5
0
57
1.21
1798678--1798751
27
2.8
26
83
4
103
16
25
20
37
1.93
1798679--1798762
26
3.2
26
70
13
73
15
26
19
39
1.91
1798812--1798930
25
4.8
25
70
11
93
21
26
19
33
1.97
1803826--1803938
39
2.9
39
98
0
217
29
20
18
31
1.96
1808343--1808374
16
2.0
16
100
0
64
18
6
25
50
1.70
1808395--1808428
16
2.1
17
88
5
52
76
0
20
2
0.92
1815097--1815189
24
3.8
25
72
12
86
16
25
22
35
1.94
1820891--1821146
128
2.0
128
94
3
453
42
17
5
34
1.72
1822559--1822607
17
2.6
18
81
15
55
46
8
2
42
1.45
1837099--1837129
16
1.9
16
93
0
53
41
25
12
19
1.87
1841369--1841410
21
2.0
21
85
0
57
38
0
21
40
1.53
1841824--1841951
25
5.2
25
75
8
64
21
25
18
35
1.96
1841700--1841869
87
2.0
87
83
2
216
20
24
21
34
1.96
1842003--1842051
25
2.0
25
95
0
89
16
28
18
36
1.92
1854140--1854192
21
2.5
21
93
0
88
30
37
9
22
1.86
1857705--1857744
20
2.1
19
86
13
55
45
15
2
37
1.59
1861174--1861200
2
13.5
2
100
0
54
48
0
0
51
1.00
1862917--1862945
2
14.5
2
100
0
58
51
0
0
48
1.00
1868183--1868233
17
2.9
18
85
8
70
58
0
1
39
1.09
1868158--1868224
27
2.4
28
87
2
109
58
0
1
40
1.07
1868183--1868221
18
2.2
17
90
4
60
58
0
2
38
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1870601--1870651
17
2.9
18
85
8
70
58
0
1
39
1.09
1870576--1870642
27
2.4
28
87
2
109
58
0
1
40
1.07
1870601--1870639
18
2.2
17
90
4
60
58
0
2
38
1.12
1874261--1874311
20
2.5
20
84
9
77
13
29
21
35
1.92
1882895--1882962
25
3.0
22
70
19
66
35
11
26
26
1.91
1882912--1882972
25
2.4
25
86
0
77
37
11
24
26
1.89
1889833--1890005
43
4.0
43
76
8
138
24
16
26
32
1.96
1890615--1890982
46
8.0
46
90
0
531
24
11
16
47
1.79
1892193--1892241
20
2.7
18
77
22
57
51
4
2
42
1.32
1897216--1897379
50
3.1
50
68
13
132
28
9
6
55
1.57
1897170--1897377
100
2.0
100
89
6
317
28
8
7
55
1.58
1900849--1900874
12
2.2
12
100
0
52
23
0
0
76
0.78
1900856--1900917
30
2.1
30
87
0
88
27
4
9
58
1.50
1900956--1901004
16
3.1
16
93
0
80
24
6
32
36
1.80
1900975--1901107
66
2.0
66
100
0
266
30
7
28
33
1.85
1905223--1905298
33
2.3
33
95
0
134
34
5
15
44
1.69
1910389--1910414
5
5.2
5
100
0
52
80
0
19
0
0.71
1910835--1910865
11
2.8
11
90
0
53
67
0
0
32
0.91
1911839--1911903
30
2.2
30
94
0
112
60
12
3
24
1.47
1913416--1913478
25
2.5
26
75
19
71
14
25
3
57
1.52
1914123--1914165
22
2.0
22
90
0
68
9
18
27
44
1.80
1914109--1914253
76
1.9
76
86
0
209
23
23
19
33
1.97

Tables:   1   2   3   4   5   6

The End!