genome.fa.s1743.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold157
Parameters: 2 7 7 80 10 50 1000
Length:  1658850

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199664--199711	9	5.1	9	75	9	51	31	4	4	60	1.35
199665--199752	19	4.4	20	75	11	65	37	2	2	57	1.23
199703--199752	21	2.5	20	86	3	73	44	0	0	56	0.99
200988--201020	5	6.6	5	100	0	66	60	18	0	21	1.36
209687--210345	44	14.6	44	73	11	458	27	19	19	33	1.96
209720--210345	89	6.9	89	76	8	512	27	19	19	34	1.95
209917--210345	134	3.2	132	88	1	588	28	19	19	33	1.96
217518--217583	29	2.2	30	84	15	84	48	1	0	50	1.10
217524--217583	31	1.9	31	87	12	88	46	1	0	51	1.10
220024--220062	18	2.2	18	86	4	53	41	12	20	25	1.88
249231--249275	10	4.3	11	81	13	51	40	0	4	55	1.20
253243--253302	25	2.3	26	80	16	70	36	10	20	33	1.86
258839--258893	29	2.0	27	82	13	67	61	10	12	14	1.56
264278--264506	50	4.5	50	77	8	178	22	27	21	27	1.99
264320--264506	100	1.8	103	81	6	236	23	29	20	26	1.99
272066--272217	62	2.4	62	82	3	162	23	29	23	24	1.99
279811--279848	9	4.1	9	96	3	67	76	0	21	2	0.91
279819--279858	18	2.2	18	86	8	55	80	2	15	2	0.93
282457--282497	19	2.0	22	86	13	61	68	0	9	21	1.18
283355--283452	49	2.0	49	84	4	126	46	11	16	25	1.80
285896--285933	5	7.8	5	97	2	69	42	0	0	57	0.98
285942--285998	15	3.9	15	80	11	55	71	0	19	8	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285964--286041	11	7.2	10	73	15	66	73	3	21	1	1.07
285960--286030	25	2.7	26	83	14	83	73	4	21	1	1.08
287217--287259	22	2.0	22	90	4	70	44	4	25	25	1.73
288483--288542	25	2.4	25	81	10	77	25	6	5	63	1.39
288829--288879	17	3.1	17	78	13	52	29	0	1	68	1.00
289206--289239	17	2.0	17	94	0	59	44	0	14	41	1.45
290850--290916	31	2.2	31	86	5	91	43	8	13	34	1.75
294486--294567	35	2.3	35	89	2	119	20	12	24	42	1.86
296325--296366	16	2.6	16	85	14	59	59	14	0	26	1.35
297627--297718	25	3.7	25	79	1	96	31	19	26	22	1.98
301489--301514	13	2.0	13	100	0	52	30	23	23	23	1.99
302243--302281	21	1.9	20	89	5	60	46	17	15	20	1.84
302693--303055	184	2.0	183	91	1	584	34	14	9	41	1.79
313650--314121	207	2.3	205	92	2	775	19	19	29	30	1.97
313650--314121	103	4.6	103	93	2	777	19	19	29	30	1.97
353901--353948	22	2.2	21	85	3	60	14	6	8	70	1.31
364306--364341	15	2.6	14	91	8	56	36	0	11	52	1.37
375339--375368	16	1.9	16	93	6	53	50	20	0	30	1.49
378199--378258	25	2.4	25	86	10	95	31	21	21	25	1.98
379564--379610	15	3.1	15	79	14	51	21	31	12	34	1.91
379806--379887	42	2.0	42	90	0	128	39	8	19	32	1.82
380438--380475	20	1.9	20	88	0	58	84	7	2	5	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380447--380491	13	3.8	12	88	11	74	84	6	0	8	0.78
380439--380491	24	2.2	25	90	10	83	84	5	1	7	0.82
390677--390867	51	3.8	51	77	10	189	25	17	27	30	1.97
390690--390877	102	1.9	101	86	5	272	24	18	27	29	1.98
399544--399602	23	2.6	23	72	5	66	44	23	10	22	1.83
399544--399609	23	2.9	23	69	13	64	42	22	9	25	1.83
399605--399660	23	2.4	23	75	0	67	39	21	12	26	1.89
412224--412275	17	3.1	17	86	13	72	67	0	1	30	1.02
412224--412308	33	2.6	33	85	5	102	62	2	4	30	1.28
416429--416487	28	2.1	28	81	9	68	20	22	37	20	1.95
421229--421415	96	1.9	96	87	6	272	32	16	13	37	1.88
423854--423880	14	1.9	14	100	0	54	59	0	0	40	0.98
424661--424727	19	3.5	19	91	2	107	10	29	22	37	1.88
435832--435930	27	3.6	27	83	1	126	15	19	25	40	1.90
441751--441814	28	2.3	28	86	5	94	26	18	28	26	1.98
441880--441954	27	2.8	27	72	0	69	18	20	14	46	1.84
446847--446969	35	3.5	35	84	0	165	16	15	31	36	1.90
450111--450271	33	4.8	32	74	8	124	29	26	14	30	1.95
450111--450303	33	5.7	35	72	9	114	29	26	13	30	1.95
450048--450303	101	2.6	101	85	2	320	27	26	15	30	1.96
451586--451614	15	1.9	15	100	0	58	55	13	0	31	1.39
457788--457812	13	1.9	13	100	0	50	32	4	24	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465614--465638	13	1.9	13	100	0	50	32	4	24	40	1.73
467096--467198	41	2.5	41	87	0	134	27	20	26	26	1.99
467676--467865	95	2.0	95	100	0	380	26	21	23	29	1.99
476760--476796	15	2.4	16	90	4	58	43	0	2	54	1.14
476833--477084	124	2.0	126	98	1	490	33	21	15	29	1.94
495254--495310	28	2.0	29	96	3	107	40	10	17	31	1.84
495310--495335	12	2.2	12	100	0	52	30	0	0	69	0.89
503573--503726	27	5.7	27	79	7	118	37	20	20	21	1.94
503574--503726	53	2.9	53	77	6	148	37	19	20	21	1.94
503920--503977	27	2.1	27	84	6	73	22	29	17	31	1.96
503967--504017	26	2.0	26	84	0	66	17	25	23	33	1.96
504023--504229	32	6.5	32	77	3	193	19	20	23	36	1.95
504023--504225	96	2.1	96	81	5	241	19	21	23	35	1.96
504176--504259	32	2.7	31	78	10	82	20	19	20	40	1.92
505512--505582	20	3.3	20	75	21	81	32	5	0	61	1.19
505504--505598	44	2.1	45	98	1	183	34	4	0	61	1.16
505516--505583	16	4.5	15	71	25	54	33	5	0	60	1.21
517553--517655	27	3.8	27	88	0	152	37	18	16	27	1.92
517825--517878	27	2.0	26	86	10	74	18	24	24	33	1.97
517832--517887	26	2.1	27	83	9	71	19	25	21	33	1.97
518921--519210	25	11.6	25	75	8	196	29	19	20	30	1.97
518917--519210	50	5.9	49	78	5	270	28	19	20	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518919--519183	75	3.5	74	75	7	241	30	18	20	30	1.97
536202--536744	27	19.9	27	82	4	518	39	20	18	20	1.92
536202--536743	107	5.0	107	80	10	582	40	20	18	20	1.92
536202--536727	134	3.8	142	77	12	496	39	21	18	20	1.92
536282--536743	170	2.8	169	79	9	502	39	20	18	21	1.92
536510--536679	89	1.9	89	89	2	261	38	20	17	24	1.93
536472--536702	116	2.0	116	85	3	313	36	21	18	22	1.95
542032--542069	19	2.0	20	94	5	69	18	34	10	36	1.85
542034--542079	20	2.3	19	85	7	56	23	34	10	30	1.89
543514--543870	27	13.3	27	89	0	464	38	24	17	19	1.93
544235--544463	28	8.2	28	88	0	343	23	21	23	31	1.98
546574--546608	17	2.1	17	88	0	52	0	22	0	77	0.78
547687--547779	46	2.0	46	97	0	177	31	13	12	41	1.83
547915--548038	34	3.7	33	77	10	117	31	8	16	42	1.79
548940--548990	16	3.2	16	85	0	75	41	1	27	29	1.67
563794--563824	11	2.8	11	95	0	53	16	9	32	41	1.80
566475--566668	50	3.9	50	76	2	176	27	22	28	21	1.99
568347--568434	25	3.5	25	100	0	176	25	27	27	20	1.99
568324--568434	50	2.2	50	88	3	161	27	25	24	23	2.00
579395--579421	13	2.1	13	100	0	54	22	0	40	37	1.54
585885--585972	27	3.3	27	85	4	124	38	20	12	28	1.89
586105--586170	27	2.5	27	85	7	82	19	19	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589516--589609	25	3.8	25	73	10	93	28	24	21	25	1.99
592352--592381	14	2.1	15	93	6	53	70	13	6	10	1.34
607012--607144	39	3.4	39	82	9	148	34	24	22	18	1.96
619193--619291	50	2.0	50	90	4	155	25	25	29	20	1.99
619257--619387	49	2.6	49	81	4	147	32	19	23	25	1.98
619589--619627	20	2.0	20	94	0	69	51	5	25	17	1.66
619597--619636	20	2.0	20	90	0	62	52	2	27	17	1.57
623450--623530	26	3.1	26	83	0	99	24	19	20	34	1.96
627650--628020	188	2.0	189	99	0	735	24	13	26	35	1.93
632900--632971	26	2.7	26	81	8	74	25	22	18	34	1.96

Tables:   1   2   3   4   5