genome.fa.s1743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold157
Parameters: 2 7 7 80 10 50 1000
Length:  1658850

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023--1550	114	4.6	114	94	0	914	26	25	16	32	1.96
1486--1706	110	2.0	110	97	0	415	25	23	17	34	1.96
9651--9726	19	4.1	18	75	12	73	36	1	0	61	1.04
9625--9736	11	10.6	11	70	20	55	37	3	0	58	1.15
11637--11677	21	1.9	22	85	14	59	36	0	2	60	1.10
11637--11687	20	2.5	21	81	15	54	37	1	1	58	1.20
14806--14851	19	2.3	20	81	3	58	43	2	0	54	1.12
14795--14858	29	2.2	30	86	8	87	40	1	0	57	1.08
15637--15675	17	2.2	17	86	9	51	56	0	2	41	1.13
15626--15675	19	2.7	19	81	6	59	58	0	2	40	1.10
15625--15684	27	2.1	27	84	6	75	53	1	1	43	1.20
16443--16499	20	2.8	19	84	10	60	66	12	1	19	1.32
18247--18479	44	5.2	44	72	8	125	29	18	19	32	1.96
18466--18816	143	2.5	143	86	1	490	28	21	20	29	1.98
32196--32237	11	3.9	11	78	15	52	71	7	2	19	1.20
32192--32237	16	2.9	15	84	9	56	71	6	2	19	1.18
32192--32248	20	2.8	19	92	5	69	70	8	1	19	1.23
35271--35505	104	2.3	104	86	1	319	23	22	31	22	1.99
36234--36277	15	2.9	15	82	0	52	9	36	11	43	1.72
38241--38484	104	2.3	103	80	9	305	25	22	29	21	1.99
41347--41463	57	2.0	58	98	1	227	37	16	13	32	1.88
41645--41735	42	2.2	42	84	7	114	63	0	3	32	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41708--41747	20	2.0	20	85	0	53	70	2	2	25	1.13
42080--42114	18	2.0	17	88	5	52	45	0	0	54	0.99
42003--49548	156	48.4	156	99	0	15065	46	6	3	43	1.45
42236--42270	18	2.0	17	88	5	52	45	0	0	54	0.99
42392--42426	18	2.0	17	88	5	52	45	0	0	54	0.99
42548--42582	18	2.0	17	88	5	52	45	0	0	54	0.99
42704--42738	18	2.0	17	88	5	52	45	0	0	54	0.99
42860--42894	18	2.0	17	88	5	52	45	0	0	54	0.99
43016--43050	18	2.0	17	88	5	52	45	0	0	54	0.99
43172--43206	18	2.0	17	88	5	52	45	0	0	54	0.99
43328--43362	18	2.0	17	88	5	52	45	0	0	54	0.99
43484--43518	18	2.0	17	88	5	52	45	0	0	54	0.99
43640--43674	18	2.0	17	88	5	52	45	0	0	54	0.99
43796--43830	18	2.0	17	88	5	52	45	0	0	54	0.99
43952--43986	18	2.0	17	88	5	52	45	0	0	54	0.99
44108--44142	18	2.0	17	88	5	52	45	0	0	54	0.99
44264--44298	18	2.0	17	88	5	52	45	0	0	54	0.99
44420--44454	18	2.0	17	88	5	52	45	0	0	54	0.99
44576--44610	18	2.0	17	88	5	52	45	0	0	54	0.99
44732--44766	18	2.0	17	88	5	52	45	0	0	54	0.99
44888--44922	18	2.0	17	88	5	52	45	0	0	54	0.99
45044--45078	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45200--45234	18	2.0	17	88	5	52	45	0	0	54	0.99
45356--45390	18	2.0	17	88	5	52	45	0	0	54	0.99
45512--45546	18	2.0	17	88	5	52	45	0	0	54	0.99
45668--45702	18	2.0	17	88	5	52	45	0	0	54	0.99
45824--45858	18	2.0	17	88	5	52	45	0	0	54	0.99
45980--46014	18	2.0	17	88	5	52	45	0	0	54	0.99
46136--46170	18	2.0	17	88	5	52	45	0	0	54	0.99
46292--46326	18	2.0	17	88	5	52	45	0	0	54	0.99
46448--46482	18	2.0	17	88	5	52	45	0	0	54	0.99
46604--46638	18	2.0	17	88	5	52	45	0	0	54	0.99
46760--46794	18	2.0	17	88	5	52	45	0	0	54	0.99
46916--46950	18	2.0	17	88	5	52	45	0	0	54	0.99
47072--47106	18	2.0	17	88	5	52	45	0	0	54	0.99
47228--47262	18	2.0	17	88	5	52	45	0	0	54	0.99
47384--47418	18	2.0	17	88	5	52	45	0	0	54	0.99
47540--47574	18	2.0	17	88	5	52	45	0	0	54	0.99
47696--47730	18	2.0	17	88	5	52	45	0	0	54	0.99
47852--47886	18	2.0	17	88	5	52	45	0	0	54	0.99
48008--48042	18	2.0	17	88	5	52	45	0	0	54	0.99
48164--48198	18	2.0	17	88	5	52	45	0	0	54	0.99
48320--48354	18	2.0	17	88	5	52	45	0	0	54	0.99
48476--48510	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48632--48666	18	2.0	17	88	5	52	45	0	0	54	0.99
48788--48822	18	2.0	17	88	5	52	45	0	0	54	0.99
48944--48978	18	2.0	17	88	5	52	45	0	0	54	0.99
49100--49134	18	2.0	17	88	5	52	45	0	0	54	0.99
49256--49290	18	2.0	17	88	5	52	45	0	0	54	0.99
49412--49446	18	2.0	17	88	5	52	45	0	0	54	0.99
51069--51108	21	1.9	21	85	10	55	67	0	5	27	1.11
51686--51719	10	3.6	10	88	11	54	91	0	0	8	0.43
52479--52514	16	2.2	16	95	0	63	41	33	0	25	1.55
55271--55341	29	2.6	26	78	14	72	57	7	1	33	1.34
58010--58079	28	2.5	28	85	0	86	31	24	12	31	1.93
62402--62444	20	2.2	20	91	0	68	23	20	13	41	1.88
68448--68811	124	2.9	124	91	1	577	29	15	21	33	1.94
72788--72827	18	2.2	18	95	0	71	42	5	30	22	1.75
73478--73508	7	4.4	7	95	0	53	61	12	0	25	1.32
74640--74739	51	2.0	51	88	4	148	44	2	22	32	1.64
75722--75828	9	11.6	9	72	11	83	61	2	2	32	1.25
75887--75930	21	2.2	20	87	4	61	20	4	4	70	1.23
76065--76107	20	2.2	20	86	0	59	25	4	2	67	1.22
79701--79760	24	2.4	25	83	8	70	33	20	28	18	1.96
89978--90094	48	2.4	49	84	4	139	54	3	3	38	1.34
90516--90540	9	2.8	9	100	0	50	32	8	0	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94536--94574	21	2.0	20	90	10	62	35	0	7	56	1.28
96723--96789	23	2.8	24	70	17	57	16	22	17	43	1.88
99107--99145	16	2.4	16	91	0	69	48	17	2	30	1.61
101252--101293	16	2.6	16	92	3	66	69	2	0	28	1.01
102360--102395	2	18.0	2	100	0	72	50	0	0	50	1.00
102422--102455	2	17.0	2	100	0	68	50	0	0	50	1.00
103916--103986	29	2.4	30	80	15	87	64	2	1	30	1.16
110174--110260	45	1.9	45	90	0	138	35	25	14	24	1.94
110274--110459	51	3.7	50	75	8	173	30	27	17	24	1.97
113592--113636	23	1.9	24	86	4	65	20	2	51	26	1.59
138304--138599	75	3.9	75	81	6	294	22	18	19	38	1.93
138323--138595	150	1.8	150	81	3	343	22	19	19	39	1.93
148986--149131	20	7.3	20	60	9	57	28	17	32	21	1.96
148956--149151	40	4.9	40	85	5	270	31	16	31	21	1.95
148925--149151	80	2.8	80	88	0	321	33	16	29	21	1.95
148934--149151	120	1.8	119	90	3	348	33	16	29	20	1.95
157950--158182	36	6.5	36	85	1	324	19	14	28	37	1.91
160940--160977	19	2.0	20	94	5	69	36	10	34	18	1.85
162009--162048	21	1.9	21	89	0	62	25	10	12	52	1.70
164798--164847	25	2.0	25	100	0	100	28	0	12	60	1.32
179304--179348	7	6.4	7	86	0	54	17	6	37	37	1.76
184893--184995	25	4.2	25	78	10	79	24	20	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184908--184995	25	3.6	24	81	10	90	25	22	23	28	1.99
184933--184999	24	2.8	24	83	2	89	28	23	22	25	1.99
190899--190975	25	3.0	26	87	9	97	22	28	19	29	1.98
190911--190983	25	3.0	24	90	6	94	21	27	19	31	1.97
190926--191017	25	3.8	24	78	5	78	28	26	18	27	1.98
192541--192578	19	2.0	19	100	0	76	42	10	10	36	1.74
196659--196834	44	4.0	44	100	0	352	40	15	11	31	1.83
199395--199442	11	4.7	10	80	10	53	64	0	0	35	0.94
199348--199442	10	9.7	10	70	12	54	62	2	2	33	1.19
199408--199478	11	6.1	11	72	16	54	64	1	2	30	1.16

Tables:   1   2   3   4   5