genome.fa.s1799.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold261
Parameters: 2 7 7 80 10 50 1000
Length:  750797

Tables:   1   2   3   

This is table  2  of  3  ( 255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389028--389278	54	4.6	53	80	7	247	18	18	18	44	1.87
389058--389278	81	2.7	79	82	4	246	17	19	19	44	1.87
399456--399622	42	4.0	42	100	0	334	11	7	11	68	1.38
405451--405606	21	7.6	21	74	7	131	17	21	16	44	1.87
405450--405617	42	4.1	41	85	4	216	16	21	16	45	1.86
405450--405606	81	1.9	82	85	3	217	17	21	16	44	1.86
405851--405877	8	3.4	8	100	0	54	37	0	14	48	1.45
410841--411284	114	4.0	114	88	5	642	26	17	22	33	1.96
420667--420797	30	4.8	29	72	16	93	48	6	45	0	1.33
420751--420973	24	8.8	24	69	18	114	44	5	47	2	1.39
420674--420848	81	2.2	81	83	9	223	47	6	45	1	1.35
420748--420973	51	4.4	53	82	11	267	45	5	46	2	1.39
420907--420989	27	3.2	25	74	17	80	38	8	49	3	1.51
425154--425182	14	2.1	14	100	0	58	0	62	0	37	0.96
425932--425965	14	2.5	14	95	4	61	14	0	35	50	1.44
428619--428656	11	3.5	11	78	7	51	13	26	7	52	1.67
428614--428656	21	2.0	21	100	0	86	13	25	9	51	1.71
435788--435825	3	12.7	3	100	0	76	0	31	0	68	0.90
437218--437269	20	2.6	20	84	0	68	46	11	7	34	1.69
437432--437471	20	1.9	22	90	10	66	42	15	5	37	1.68
439662--439700	19	2.1	19	85	0	51	41	0	12	46	1.42
454624--454735	25	4.5	25	80	3	100	33	21	26	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459147--459283	66	2.1	66	81	2	159	13	25	20	40	1.89
460784--460864	7	11.3	7	80	5	63	44	35	0	19	1.51
460786--460920	14	9.4	14	69	12	58	45	31	2	21	1.64
460786--460883	22	4.5	22	75	5	83	45	31	1	21	1.58
460753--460853	51	2.0	50	82	5	123	42	33	0	22	1.61
460841--460878	15	2.6	15	83	4	51	42	36	2	18	1.64
461479--461583	40	2.6	40	84	1	129	29	21	18	30	1.97
461364--461738	155	2.4	155	86	1	500	29	21	18	30	1.97
461629--461759	40	3.3	40	89	0	172	26	22	21	29	1.99
463286--463330	14	3.1	15	81	15	58	35	2	0	62	1.08
465240--465294	21	2.6	21	91	0	92	23	36	27	12	1.91
468881--468932	20	2.8	18	85	8	61	36	1	0	61	1.07
477132--477198	19	3.3	19	78	18	64	53	5	0	40	1.25
478464--478503	20	2.0	20	90	0	62	27	10	12	50	1.72
478443--478519	14	5.0	15	72	20	61	32	7	16	42	1.77
483936--484026	44	2.1	44	91	0	146	46	13	13	27	1.80
485839--485975	69	2.0	69	89	0	211	48	10	16	24	1.78
487360--487432	31	2.3	32	83	6	96	47	5	16	30	1.69
488314--488370	28	2.1	27	90	9	89	40	8	0	50	1.33
488427--488501	27	2.8	27	88	8	109	21	28	30	20	1.98
488637--488675	19	2.0	21	85	10	55	23	0	10	66	1.22
489579--489616	18	2.1	18	95	0	67	34	7	47	10	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492537--493631	159	6.9	153	73	12	876	30	12	8	48	1.71
492537--493637	317	3.5	317	97	0	2044	30	12	8	48	1.71
495447--495557	40	2.8	39	86	4	143	34	24	24	17	1.96
495447--495582	40	3.4	39	81	8	141	36	23	22	18	1.95
495619--495770	41	3.7	41	89	1	225	23	22	25	28	1.99
495921--496000	41	2.0	41	94	0	142	25	22	26	26	2.00
496005--496049	20	2.3	19	81	11	54	22	6	4	66	1.33
495691--496152	230	2.0	230	97	0	879	36	10	14	37	1.81
496459--496512	21	2.5	21	74	14	56	25	0	37	37	1.57
499672--502077	43	56.0	43	99	0	4778	20	23	32	23	1.98
506991--507043	22	2.4	22	77	0	61	43	15	15	26	1.85
508229--508277	10	4.9	10	92	0	71	77	0	22	0	0.77
508221--508277	20	2.8	20	86	7	80	78	0	21	0	0.74
508225--508277	17	3.1	17	79	15	65	77	0	22	0	0.77
508887--508921	18	1.9	18	88	0	52	51	5	0	42	1.25
510782--510814	16	2.1	16	100	0	66	18	15	18	48	1.81
510785--510822	16	2.4	16	90	0	58	21	13	18	47	1.82
516846--516915	25	2.8	25	84	4	88	27	21	18	32	1.97
518053--518082	16	1.9	16	93	6	53	30	0	20	50	1.49
525872--525921	16	3.4	16	73	21	63	34	2	18	46	1.60
525870--525938	28	2.4	28	90	2	111	34	2	15	46	1.61
526095--526136	13	3.2	13	86	0	57	47	2	9	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526942--526973	15	2.1	15	94	0	55	53	9	6	31	1.58
528328--528774	147	3.0	146	79	4	420	36	23	14	25	1.93
529612--529653	19	2.1	20	86	8	59	42	47	0	9	1.36
530521--530560	19	2.2	18	86	13	55	65	5	2	27	1.27
530625--531222	114	5.3	114	83	4	701	26	24	22	26	2.00
536419--536443	13	1.9	13	100	0	50	8	0	24	68	1.16
539216--539308	39	2.5	37	80	7	98	27	29	22	20	1.98
540809--540875	3	23.7	3	75	11	52	58	2	2	35	1.29
542254--542314	29	2.3	26	80	11	70	44	6	8	40	1.60
552533--552576	22	2.0	23	81	4	54	6	34	2	56	1.38
552761--552796	14	2.7	14	91	8	58	8	38	0	52	1.32
558431--558497	35	1.9	35	90	3	109	37	10	8	43	1.71
563466--563506	12	3.4	12	82	0	55	43	0	43	12	1.41
563457--563491	18	1.9	18	88	0	52	42	0	48	8	1.33
563804--563884	27	3.0	26	78	10	83	34	0	49	16	1.46
563838--563881	21	2.1	21	91	0	70	36	0	52	11	1.38
571619--571724	44	2.4	44	90	0	158	34	23	16	24	1.95
572162--572401	122	2.0	122	87	3	349	30	25	16	27	1.96
578775--578812	19	2.0	19	100	0	76	26	31	10	31	1.90
583033--583074	3	14.0	3	94	0	75	64	2	0	33	1.07
583078--583405	168	1.9	169	90	1	516	32	18	13	35	1.90
590029--590209	34	5.3	35	88	5	239	13	13	33	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594907--595125	43	5.1	45	78	11	194	33	25	14	27	1.94
597568--597622	22	2.5	22	90	0	83	40	32	12	14	1.84
602538--602582	21	2.0	23	87	8	67	64	4	8	22	1.40
603164--603202	16	2.4	16	87	8	53	30	7	0	61	1.24
615733--615812	24	3.4	24	82	1	90	48	22	6	22	1.72
617722--617752	15	2.1	15	100	0	62	25	54	12	6	1.62
621422--621481	28	2.3	26	81	13	70	18	11	1	68	1.28
622654--622699	24	1.9	24	86	8	67	13	28	34	23	1.92
623865--623896	16	2.0	16	93	0	55	34	6	6	53	1.51
631173--631204	5	6.4	5	96	0	55	62	3	0	34	1.11
633334--633363	16	1.9	16	93	6	53	30	0	20	50	1.49
636435--636509	24	3.0	24	78	5	69	58	2	2	36	1.26
638366--638415	25	1.9	27	84	8	68	42	6	2	50	1.38
644434--645791	89	14.7	90	72	11	570	29	20	16	33	1.95
644390--645858	44	31.9	44	71	11	579	29	20	16	33	1.95
644574--644694	51	2.4	51	87	2	163	28	19	20	30	1.97
644442--645221	285	2.7	285	88	1	1098	30	21	17	31	1.96
644859--644975	51	2.3	51	83	2	146	29	21	16	32	1.95
644296--644893	329	1.8	326	86	2	815	30	21	17	30	1.96
645085--645350	96	2.8	94	81	5	293	28	20	17	34	1.95
645085--645321	51	4.9	50	69	13	165	29	18	17	34	1.94
645247--645756	139	3.7	138	74	9	315	28	18	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645439--645856	89	4.7	89	87	2	542	29	18	15	36	1.92
655213--655254	19	2.2	19	91	0	66	38	16	9	35	1.81
660360--660444	42	2.0	42	88	0	125	22	16	17	43	1.88
676114--676154	18	2.3	19	87	8	59	31	4	0	63	1.15
676114--676160	17	2.7	17	80	9	51	38	4	0	57	1.18
676170--676217	25	1.9	25	83	8	62	20	2	6	70	1.19
679637--679687	22	2.4	22	86	3	68	33	19	5	41	1.76
687571--687644	27	2.8	28	82	8	84	44	5	16	33	1.70
696683--696729	18	2.6	18	86	10	60	27	8	10	53	1.64
696767--696856	32	2.8	31	80	14	103	40	8	10	41	1.70

Tables:   1   2   3