genome.fa.s1836.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold168
Parameters: 2 7 7 80 10 50 1000
Length:  938898

Tables:   1   2   3   

This is table  2  of  3  ( 356 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295515--296361	27	31.2	27	84	3	763	20	19	20	40	1.92
303182--303259	29	2.7	29	96	2	140	24	28	29	17	1.98
308356--308385	11	2.7	11	94	0	51	50	0	3	46	1.18
310676--310806	55	2.4	54	87	5	183	25	32	19	22	1.97
312537--312670	65	2.1	63	81	13	152	47	14	8	29	1.74
312731--312789	19	3.3	17	79	11	73	40	8	13	37	1.75
317520--317576	20	2.8	20	89	0	78	42	0	31	26	1.56
328778--328968	50	3.8	50	85	0	247	27	22	28	20	1.99
328782--329006	50	4.5	49	79	6	172	29	23	26	21	1.99
331206--331252	19	2.4	19	89	3	76	29	10	12	46	1.76
336136--336177	17	2.5	17	88	7	59	35	2	19	42	1.64
340133--340222	46	2.0	46	91	4	146	22	5	11	61	1.50
341272--341320	19	2.6	19	100	0	98	53	24	22	0	1.47
341273--341313	11	3.9	11	78	21	52	53	26	19	0	1.45
341478--341514	15	2.5	15	100	0	74	35	0	37	27	1.57
343007--343059	28	1.9	28	84	3	72	58	3	0	37	1.16
343013--343109	18	5.1	18	71	15	61	56	3	2	38	1.27
343084--343411	163	2.0	164	99	0	649	40	6	6	46	1.55
344700--344749	20	2.4	21	83	6	57	58	4	0	38	1.17
344740--344778	20	2.0	20	85	10	53	53	0	0	46	1.00
344959--344997	20	2.0	20	85	10	53	53	0	0	46	1.00
344692--345131	219	2.0	220	99	0	864	40	10	10	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349371--349431	26	2.3	26	97	0	113	47	21	6	24	1.74
349964--350148	50	3.7	49	76	9	162	21	27	23	27	1.99
350554--350610	30	1.9	30	85	0	78	31	24	7	36	1.82
352640--352735	26	3.7	26	78	8	97	33	33	11	21	1.89
353301--353357	29	2.0	29	86	6	80	15	28	35	21	1.94
354763--354872	36	3.1	35	71	7	87	33	20	23	21	1.97
354769--354934	72	2.3	72	81	4	183	37	19	21	20	1.94
355322--355527	106	2.0	104	91	1	331	44	16	6	33	1.72
359437--359588	72	2.1	72	83	0	187	36	21	20	21	1.95
359463--359584	36	3.4	36	70	0	100	39	22	17	21	1.92
360000--360210	109	1.9	109	93	0	359	45	15	5	33	1.70
365959--366017	30	1.9	31	86	3	84	47	3	20	28	1.66
377066--377110	22	2.1	21	83	4	54	44	0	8	46	1.34
379716--379894	45	4.0	45	100	0	358	35	2	22	39	1.67
382295--382340	23	2.0	23	100	0	92	30	26	17	26	1.97
382172--382465	158	1.9	158	99	0	579	32	29	15	22	1.95
399776--399831	24	2.3	24	81	9	69	19	26	17	35	1.94
410460--411449	494	2.0	494	100	0	1980	34	18	17	28	1.94
413817--414882	533	2.0	533	100	0	2132	39	10	11	39	1.76
421417--421545	50	2.6	49	86	4	170	27	20	30	22	1.98
421520--421645	49	2.6	49	91	1	200	30	20	23	24	1.98
421851--421889	20	2.0	20	90	10	62	56	5	23	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423050--423080	6	5.2	6	100	0	62	19	0	0	80	0.71
431224--431288	20	3.2	20	87	8	80	12	35	21	30	1.90
431240--431311	20	3.5	20	81	9	83	11	31	23	33	1.90
434626--434660	17	2.1	17	88	0	52	28	25	17	28	1.97
435197--435239	18	2.4	18	81	18	54	4	25	0	69	1.07
435225--435292	26	2.6	26	95	2	109	4	36	0	58	1.18
448541--448584	23	2.0	22	81	4	52	15	34	25	25	1.95
451894--451923	2	15.0	2	92	0	51	50	3	0	46	1.18
454186--454269	27	3.1	27	89	0	132	19	22	35	22	1.96
454186--454288	27	3.8	27	85	2	127	22	22	33	21	1.97
454354--454398	22	2.1	21	87	4	63	66	2	31	0	1.04
457796--458088	145	2.0	145	100	0	586	30	16	10	42	1.82
458540--458607	35	2.0	33	83	8	84	55	4	2	36	1.35
460431--460465	18	2.0	17	88	5	52	48	5	17	28	1.69
465129--465172	19	2.4	19	84	3	54	38	6	2	52	1.41
469916--469959	2	22.0	2	100	0	88	0	50	0	50	1.00
472955--473031	23	3.2	23	63	22	59	50	11	10	27	1.71
478738--478801	31	2.0	31	82	8	76	20	50	0	29	1.49
486466--486609	51	2.8	50	77	3	162	24	26	19	29	1.98
486485--487210	123	5.7	123	71	13	522	26	26	17	29	1.98
486615--486721	51	2.1	51	84	3	135	29	24	16	28	1.97
486468--487230	258	2.9	257	87	3	1077	26	25	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489532--489571	8	5.0	8	85	11	55	12	2	10	75	1.15
489538--489567	9	3.4	9	95	4	53	10	0	10	80	0.92
492564--492620	30	1.9	29	82	10	71	29	24	5	40	1.77
496175--496309	67	2.0	68	98	1	263	23	17	28	31	1.97
498989--499021	16	1.9	18	88	11	52	45	36	3	15	1.61
499698--499740	18	2.6	17	82	10	54	13	20	0	65	1.27
499702--499746	24	1.9	24	86	4	65	11	20	0	68	1.19
499710--499754	24	1.9	23	86	13	65	8	17	2	71	1.23
500637--500681	13	3.6	13	82	14	51	13	8	6	71	1.31
500638--500681	12	3.7	12	87	9	63	13	9	6	70	1.33
500639--500680	11	3.6	11	90	6	57	14	9	7	69	1.37
508162--508376	26	8.3	25	74	12	100	25	16	19	38	1.92
508198--508376	26	6.9	25	75	11	105	25	15	20	38	1.92
508147--508376	52	4.4	53	81	7	231	25	15	19	39	1.91
508192--508379	78	2.4	79	81	7	215	25	16	19	38	1.92
509020--509055	18	2.0	18	100	0	72	22	22	27	27	1.99
519903--519944	19	2.2	19	91	4	66	38	2	21	38	1.67
519913--519953	19	2.3	18	87	8	57	29	2	19	48	1.61
520706--521001	26	11.3	26	81	8	170	24	16	17	40	1.90
520706--520858	51	2.9	52	78	12	145	22	17	18	41	1.91
520774--521007	26	9.0	26	81	7	246	25	14	19	40	1.90
520746--521007	52	5.0	52	86	4	300	25	15	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520746--521007	78	3.4	78	80	11	288	25	15	19	40	1.90
526103--526451	67	5.1	66	61	19	169	42	8	7	40	1.64
525936--527302	138	10.0	138	87	3	1765	44	7	7	39	1.62
525936--527302	540	2.5	542	85	4	1831	44	7	7	39	1.62
536047--536097	13	3.9	13	80	10	68	29	5	27	37	1.80
536394--536432	20	1.9	21	84	5	53	38	0	0	61	0.96
538596--538628	14	2.4	14	94	0	57	51	15	15	18	1.77
541115--541161	24	1.9	24	86	4	67	36	0	38	25	1.56
541829--542392	27	21.1	27	80	5	396	37	21	20	20	1.95
541829--542392	80	7.0	81	82	5	531	37	21	20	20	1.95
542408--542451	23	1.9	23	95	0	79	22	6	27	43	1.78
542413--542493	23	3.5	23	78	6	65	22	6	24	46	1.74
542619--542674	26	2.2	26	83	0	67	19	19	26	33	1.96
542668--542867	32	6.3	32	83	2	224	22	20	20	37	1.94
545368--545419	3	17.7	3	80	4	61	30	5	1	61	1.30
550379--550412	16	2.1	17	88	5	52	26	11	32	29	1.92
560105--560136	15	2.1	15	94	0	55	68	9	6	15	1.36
566667--566830	40	4.1	40	85	1	204	29	21	21	27	1.99
566667--566830	79	2.1	80	83	3	206	29	21	21	27	1.99
567234--567423	7	26.6	7	67	14	57	23	1	33	42	1.61
567234--567278	14	3.2	14	90	0	72	20	0	33	46	1.51
567295--567333	15	2.6	15	91	0	60	20	0	41	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567290--567335	22	2.1	22	83	0	56	21	0	34	43	1.53
567578--567616	15	2.6	15	91	0	60	20	0	41	38	1.53
567573--567618	22	2.1	22	83	0	56	21	0	34	43	1.53
567200--567743	283	1.9	283	97	0	1027	29	1	24	43	1.63
569146--569176	16	1.9	16	100	0	62	45	6	3	45	1.45
569216--569261	22	2.1	22	83	0	56	56	0	2	41	1.11
569463--569489	14	1.9	14	100	0	54	51	22	11	14	1.73
570225--570252	12	2.3	12	100	0	56	32	7	10	50	1.64
570353--570377	9	2.8	9	100	0	50	0	8	0	92	0.40
573036--573170	43	3.1	43	91	2	200	22	17	28	32	1.96

Tables:   1   2   3