genome.fa.s1836.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold168
Parameters: 2 7 7 80 10 50 1000
Length:  938898

Tables:   1   2   3   

This is table  3  of  3  ( 356 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588232--588266	9	3.9	9	84	0	52	37	0	2	60	1.12
594339--594373	3	11.7	3	100	0	70	0	0	34	65	0.93
594371--594404	2	17.0	2	93	0	59	2	0	47	50	1.16
594573--594644	32	2.2	34	82	5	94	30	16	11	41	1.83
598126--598191	20	3.3	20	64	26	50	37	22	30	9	1.85
599360--599470	56	2.0	55	91	1	177	29	11	31	27	1.92
599919--600020	53	1.9	53	91	0	168	42	22	16	18	1.89
599912--600025	27	4.3	27	85	2	158	42	21	16	18	1.88
600217--600271	26	2.1	26	86	0	74	21	18	21	38	1.94
600703--600751	23	2.1	23	96	0	89	51	4	18	26	1.64
611370--611430	26	2.4	25	86	10	79	40	4	19	34	1.73
612450--612490	21	2.0	21	90	0	64	31	24	7	36	1.83
615528--615563	15	2.5	14	86	8	54	80	2	8	8	0.99
615513--615564	27	1.9	27	88	7	79	76	3	7	11	1.12
615515--615566	12	4.0	12	76	16	50	73	3	9	13	1.23
622473--622596	61	2.0	61	96	0	230	33	9	25	30	1.88
623606--623705	46	2.2	46	90	0	155	21	17	19	43	1.89
627483--627537	25	2.2	25	96	0	101	40	3	21	34	1.71
628154--628282	50	2.6	49	80	7	152	25	24	29	20	1.99
628111--628338	49	4.5	50	75	11	180	27	20	28	23	1.99
645566--645664	43	2.3	43	87	3	135	29	22	16	32	1.95
646082--646107	12	2.2	12	100	0	52	69	15	0	15	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649795--649820	12	2.2	12	100	0	52	61	30	0	7	1.24
649914--650143	41	5.6	41	79	4	232	35	15	26	23	1.94
650040--650106	21	3.2	21	72	4	64	31	14	31	22	1.94
656241--656289	20	2.5	20	96	0	89	36	20	12	30	1.89
669874--669915	21	2.0	21	90	0	66	19	2	11	66	1.34
670818--671170	27	13.1	26	81	3	321	18	17	22	41	1.90
670816--671170	81	4.4	81	82	3	378	18	18	22	41	1.91
674762--675079	80	4.0	80	81	6	313	20	17	21	41	1.91
674747--675078	27	12.4	27	77	5	264	20	17	21	40	1.92
678721--678869	73	2.0	74	98	1	291	34	6	16	42	1.74
680197--680228	15	2.1	15	94	0	55	15	6	9	68	1.36
690960--691189	27	8.6	27	91	2	356	32	16	14	36	1.89
696949--697078	62	2.2	62	82	6	153	40	4	4	50	1.44
698249--698546	67	4.5	67	88	1	440	26	11	8	54	1.64
698249--698546	133	2.2	132	89	1	445	26	11	8	54	1.64
701739--701771	16	2.1	16	94	0	57	39	6	33	21	1.78
701993--702045	14	3.7	15	78	12	58	49	0	0	50	1.00
712486--712523	16	2.3	17	82	17	53	78	5	5	10	1.06
712706--712742	18	2.0	19	89	5	58	10	10	5	72	1.25
715831--715882	27	1.9	27	88	7	79	65	5	0	28	1.16
716117--716171	22	2.6	20	75	13	56	65	3	0	30	1.10
716269--716893	312	2.0	311	95	0	1117	33	13	11	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722062--722179	42	2.9	41	80	9	127	22	27	20	28	1.99
722443--722480	18	2.1	18	90	0	58	15	34	0	50	1.45
722443--722471	6	4.8	6	100	0	58	17	34	0	48	1.47
726684--726732	19	2.5	19	83	3	62	20	2	4	73	1.10
726768--726949	94	1.9	96	86	9	266	24	12	12	50	1.74
727014--727335	107	3.0	107	89	2	513	27	11	10	50	1.72
726768--727454	366	1.9	350	88	6	1038	27	13	11	47	1.77
728316--728856	114	4.7	114	85	1	724	26	25	21	26	2.00
728758--729001	72	3.3	72	83	5	276	22	24	25	27	2.00
728905--729229	115	2.9	115	86	4	435	25	26	22	24	2.00
729134--729372	72	3.3	71	85	2	325	23	24	23	28	2.00
730652--730921	136	2.0	137	99	0	533	27	21	16	34	1.95
732792--733047	130	2.0	130	91	1	415	48	8	21	21	1.76
735514--735700	51	3.7	49	74	12	164	25	16	27	31	1.96
735711--735798	45	2.0	45	90	0	140	27	18	21	32	1.96
738636--738689	22	2.5	22	81	0	63	18	1	42	37	1.61
748017--748133	48	2.4	49	87	2	157	37	23	20	18	1.94
749060--749111	22	2.4	21	80	6	59	17	1	44	36	1.60
749106--749134	11	2.6	11	100	0	58	13	10	31	44	1.78
759408--759435	14	2.0	14	100	0	56	14	0	14	71	1.15
769066--769103	19	2.0	19	85	10	51	21	42	0	36	1.53
771974--772205	79	2.9	79	95	0	419	19	39	21	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775543--775588	21	2.3	20	78	14	51	30	6	17	45	1.73
782792--782844	26	2.0	26	85	0	70	37	18	18	24	1.94
783798--783822	12	2.1	12	100	0	50	24	16	44	16	1.86
786553--786600	25	1.9	25	82	0	60	33	2	16	47	1.58
788876--789002	39	3.3	39	85	2	166	18	25	18	37	1.94
789872--789974	54	1.9	54	83	0	134	26	21	28	24	1.99
790081--790124	19	2.3	19	84	7	54	25	18	4	52	1.64
792694--792719	2	13.0	2	100	0	52	50	0	0	50	1.00
794437--794507	29	2.4	29	80	0	88	36	21	7	35	1.80
794842--794893	17	2.9	17	81	10	59	69	0	0	30	0.89
794838--794893	19	3.1	19	79	5	62	69	0	0	30	0.89
794961--795005	22	2.0	22	86	0	63	48	22	2	26	1.62
799300--799326	2	13.5	2	100	0	54	51	48	0	0	1.00
804899--804925	13	2.1	13	100	0	54	59	0	18	22	1.38
804902--804974	37	2.0	37	94	0	128	61	0	15	23	1.33
806059--806125	6	11.7	6	76	6	59	73	0	20	5	1.04
806029--806125	39	2.5	39	82	1	122	71	1	19	8	1.18
810194--810244	23	2.2	23	92	0	84	41	21	9	27	1.84
819092--819322	117	2.0	117	90	0	363	27	15	18	39	1.90
819817--819867	22	2.3	23	80	16	63	41	0	9	49	1.36
822816--823046	117	2.0	117	92	0	381	26	15	19	39	1.90
823541--823591	22	2.3	23	83	16	72	41	0	7	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824325--824357	13	2.6	13	90	4	50	60	9	9	21	1.54
830575--830659	25	3.4	25	82	9	111	23	24	21	30	1.99
833351--833450	27	3.8	27	82	6	125	26	22	9	43	1.82
836323--836382	30	2.0	30	100	0	120	40	23	6	30	1.80
839895--839924	12	2.5	12	94	0	51	6	43	26	23	1.78
882986--883051	21	3.2	21	69	16	66	16	33	18	31	1.93
882949--883051	41	2.5	41	90	1	163	17	30	18	33	1.94
896111--896148	19	2.0	19	89	0	58	55	5	5	34	1.45
906312--906342	9	3.4	9	95	0	53	6	35	3	54	1.42
906310--906358	18	2.7	18	81	6	55	6	32	4	57	1.42
914359--914399	21	2.0	21	85	0	55	24	17	7	51	1.70
917083--917134	26	2.0	26	96	0	95	25	15	21	38	1.92
918122--918243	28	4.4	28	85	4	138	32	25	18	22	1.97
918619--919621	27	36.6	27	77	9	779	16	18	20	43	1.88
918618--919621	54	18.8	53	79	7	914	16	18	20	43	1.88
918619--919621	81	12.5	80	78	7	889	16	18	20	43	1.88
919219--919307	43	2.1	43	89	0	133	13	21	19	46	1.84
919249--919279	16	1.9	16	100	0	62	12	29	12	45	1.80
919192--919336	70	2.1	70	85	0	191	15	20	20	44	1.86
919262--919621	107	3.4	108	82	6	457	16	18	20	45	1.86
925513--925566	25	2.1	26	86	10	76	31	3	1	62	1.23
928340--928386	10	4.6	10	82	12	60	38	0	2	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928340--928384	22	2.0	23	91	4	74	40	0	2	57	1.11
935881--936237	195	1.8	195	93	0	624	26	16	21	35	1.94
936081--938084	304	6.7	302	85	4	2415	27	17	21	33	1.96
936081--938084	590	3.4	592	81	7	2013	27	17	21	33	1.96
938131--938510	195	1.9	195	87	2	548	25	16	20	36	1.94
938342--938898	304	1.8	303	85	0	772	26	17	22	34	1.95

Tables:   1   2   3

The End!