genome.fa.s1947.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold189
Parameters: 2 7 7 80 10 50 1000
Length:  1445563

Tables:   1   2   3   4   

This is table  3  of  4  ( 480 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694745--694805	30	2.0	30	83	0	77	14	31	32	21	1.93
695912--695936	13	1.9	13	100	0	50	32	4	24	40	1.73
697347--697445	41	2.4	41	87	0	144	30	20	25	24	1.99
698188--698416	29	7.9	29	76	9	153	37	23	13	24	1.91
698323--698428	29	3.7	28	79	9	99	37	23	12	26	1.90
700264--700351	43	2.0	43	88	0	131	25	12	14	47	1.79
704421--704445	6	4.2	6	100	0	50	68	0	0	32	0.90
710339--710473	51	2.6	51	81	2	155	25	17	26	31	1.97
712346--712385	20	2.0	20	85	9	55	55	0	0	45	0.99
715683--715713	9	3.4	9	90	0	53	38	22	12	25	1.90
718360--718413	21	2.8	20	75	8	58	27	37	5	29	1.80
720827--720864	17	2.2	17	100	0	76	28	26	5	39	1.78
744347--744431	28	3.1	28	70	3	82	29	22	15	32	1.94
744342--744449	55	2.0	55	84	0	144	29	23	15	31	1.95
746966--747000	13	2.7	13	90	0	52	5	22	48	22	1.72
754711--754801	46	2.0	46	100	0	182	30	17	15	36	1.91
771385--771433	20	2.5	20	89	0	71	22	24	0	53	1.47
776537--776562	3	8.7	3	100	0	52	0	0	34	65	0.93
779132--779196	29	2.2	29	88	0	94	32	23	16	27	1.96
779130--779203	29	2.5	28	82	4	85	28	25	16	29	1.97
779181--779320	61	2.3	61	83	0	172	32	23	12	32	1.91
786969--787003	16	2.3	15	90	5	52	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787616--787674	25	2.4	23	78	13	64	35	1	1	61	1.16
805024--805075	26	2.0	26	100	0	104	34	0	19	46	1.50
808300--808338	21	1.9	20	84	5	51	43	5	7	43	1.55
814341--814587	49	4.9	50	80	6	232	24	27	19	28	1.99
814341--814587	99	2.4	101	81	6	268	24	27	19	28	1.99
817315--817372	30	1.9	31	89	3	91	53	8	18	18	1.70
821854--821929	31	2.5	29	78	16	73	34	18	3	43	1.69
822064--822141	25	3.1	25	75	10	79	29	17	24	28	1.98
829367--829425	25	2.4	25	80	11	75	32	20	22	25	1.98
832969--833020	25	2.0	26	85	14	72	65	0	3	30	1.10
840039--840094	26	2.2	26	83	6	69	30	1	3	64	1.21
842521--842609	42	2.2	41	78	9	92	23	28	26	21	1.99
843610--843646	19	1.9	19	88	0	56	54	8	0	37	1.30
844015--844040	6	4.3	6	100	0	52	84	0	0	15	0.62
844879--844919	16	2.5	17	77	18	50	19	2	0	78	0.87
844858--844906	19	2.6	19	84	9	66	18	0	6	75	1.00
845036--845070	17	2.1	17	94	0	61	34	14	28	22	1.93
846543--846677	46	2.9	46	100	0	270	39	31	8	20	1.83
851528--851561	17	2.0	17	100	0	68	52	17	0	29	1.45
852739--852768	5	6.2	5	96	3	53	60	0	0	40	0.97
860603--860690	45	2.0	44	93	2	149	35	23	15	25	1.95
862478--862513	18	2.0	18	100	0	72	16	16	11	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867373--867430	26	2.3	24	77	11	62	29	1	1	67	1.11
893616--893768	56	2.8	54	84	3	216	33	15	28	22	1.95
894091--894343	30	8.7	30	78	7	179	17	15	24	43	1.87
894121--894346	28	7.9	28	76	8	163	18	15	23	42	1.88
894121--894346	58	3.9	57	75	9	201	18	15	23	42	1.88
894091--894346	88	3.0	88	89	4	362	17	15	23	43	1.87
895812--895848	18	2.1	18	94	0	65	48	10	8	32	1.67
896453--896489	17	2.2	17	95	0	65	59	8	0	32	1.27
896497--896577	43	1.9	42	92	2	135	48	2	14	34	1.58
900315--900355	20	2.0	20	100	0	82	39	19	4	36	1.73
904976--905027	24	2.2	24	89	0	77	50	9	3	36	1.54
905869--905899	6	5.2	6	96	0	53	64	19	16	0	1.29
909232--909279	24	2.0	24	83	0	60	47	8	4	39	1.53
916381--916420	18	2.2	18	100	0	80	42	17	20	20	1.89
917921--918093	57	3.0	57	83	2	213	28	18	7	45	1.76
919853--919914	26	2.3	28	76	15	69	25	19	32	22	1.97
920616--920706	28	3.3	28	79	1	103	9	21	21	46	1.81
920636--920758	27	4.5	27	77	10	99	12	17	20	49	1.78
928967--929030	27	2.3	26	79	10	74	14	18	37	29	1.90
929808--929897	28	3.2	28	76	1	101	7	22	25	44	1.79
933807--933852	22	2.1	22	100	0	92	17	21	0	60	1.35
933814--933862	22	2.2	22	88	0	71	20	24	0	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946053--946134	42	2.0	42	83	9	105	31	24	12	31	1.92
946094--946186	47	2.0	48	86	2	134	33	27	13	24	1.94
948729--948823	45	2.1	46	86	5	131	30	24	18	26	1.98
948820--949015	51	3.9	50	77	4	205	30	28	17	23	1.97
948827--949011	101	1.8	101	87	3	273	30	28	17	23	1.97
953863--953911	16	3.1	16	90	0	71	40	6	30	22	1.78
953908--953953	18	2.5	19	79	13	51	54	2	2	41	1.25
953914--954170	121	2.1	120	97	0	487	52	4	0	42	1.27
961969--962059	28	3.2	28	81	6	83	26	24	27	21	1.99
961999--962059	30	2.0	30	93	0	104	27	21	27	22	1.99
962163--962236	26	2.8	25	83	4	76	37	22	22	16	1.93
962424--962726	27	11.3	27	83	3	342	20	20	18	40	1.91
969168--969240	28	2.6	28	86	0	92	35	26	20	17	1.95
969370--969449	26	3.0	27	81	3	74	40	23	18	17	1.91
974406--974449	23	1.9	23	95	0	79	29	9	20	40	1.83
978532--978593	19	3.2	19	67	13	54	35	19	30	14	1.92
978506--978634	39	3.3	39	88	0	186	31	19	32	16	1.94
983684--983742	27	2.2	27	78	3	66	42	18	5	33	1.72
984922--984973	24	2.2	24	89	0	77	53	7	3	34	1.48
987467--987501	17	1.9	19	88	11	56	40	0	2	57	1.14
987467--987511	18	2.6	18	86	10	58	40	0	4	55	1.20
989208--989258	17	3.1	17	86	8	70	68	1	0	29	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989907--989968	30	2.1	30	93	3	108	58	0	9	32	1.31
992096--992294	99	2.0	100	99	1	391	43	10	19	27	1.82
1000579--1000630	21	2.5	22	81	12	56	42	0	0	57	0.98
1000712--1000753	9	4.8	9	85	8	52	30	0	2	66	1.04
1000608--1000810	101	2.0	102	98	0	390	33	7	6	51	1.56
1004737--1004775	17	2.3	17	90	0	60	71	2	7	17	1.21
1004747--1004794	24	2.0	24	83	4	60	75	0	10	14	1.06
1005170--1005199	13	2.3	13	94	0	51	56	6	6	30	1.51
1025079--1025242	86	2.0	77	86	12	224	34	15	15	34	1.89
1032279--1032312	16	2.2	15	89	5	50	55	2	0	41	1.15
1032342--1032393	17	3.1	17	73	15	54	48	1	0	50	1.12
1037748--1037796	20	2.5	20	81	15	66	14	22	6	57	1.59
1040342--1040383	12	3.5	12	81	12	50	21	26	42	9	1.83
1048575--1048666	41	2.2	41	90	0	139	28	19	21	30	1.98
1049285--1049387	41	2.5	41	87	3	136	28	18	24	29	1.98
1050948--1051078	49	2.7	48	88	3	190	41	9	0	48	1.40
1051027--1051199	94	1.8	94	90	2	276	39	8	3	48	1.50
1056776--1056810	17	2.1	17	94	0	61	40	20	5	34	1.76
1061454--1061673	51	4.3	52	79	10	231	23	16	27	31	1.96
1061450--1061673	102	2.2	101	93	2	387	23	17	27	31	1.97
1069010--1069125	43	2.8	41	82	8	135	21	18	25	35	1.95
1071074--1071114	22	1.9	22	90	5	66	21	26	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1075058--1075106	21	2.3	21	89	0	71	26	32	26	14	1.94
1078596--1078624	15	2.0	15	93	6	51	27	31	20	20	1.98
1083031--1083276	26	9.3	26	80	7	248	35	19	18	26	1.95
1085319--1085387	32	2.2	32	100	0	138	28	13	20	37	1.90
1097054--1097087	16	2.1	17	88	5	52	76	14	2	5	1.09
1099267--1099296	16	1.9	16	93	6	53	30	0	20	50	1.49
1099733--1099787	21	2.6	21	75	11	58	41	1	14	41	1.56
1108144--1108230	20	4.3	20	72	4	68	11	28	19	40	1.86
1108148--1108224	40	1.9	40	84	10	104	10	31	19	38	1.85
1114224--1114405	90	2.0	90	98	0	355	39	6	15	39	1.73

Tables:   1   2   3   4