genome.fa.s2091.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold321
Parameters: 2 7 7 80 10 50 1000
Length:  1029294

Tables:   1   2   3   

This is table  1  of  3  ( 319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8058--8119	29	2.1	29	90	0	97	27	12	29	30	1.93
18354--18415	29	2.1	29	90	0	97	27	12	29	30	1.93
23639--23800	56	2.9	55	73	4	157	30	20	18	30	1.96
36434--36477	19	2.3	19	84	4	52	4	4	11	79	1.02
36449--36498	11	4.6	11	78	9	50	4	8	8	80	1.03
36449--36506	10	5.6	10	82	13	55	5	8	6	79	1.06
41734--41781	8	5.9	8	78	4	51	83	4	6	6	0.91
49414--49465	21	2.5	21	93	0	86	30	38	9	21	1.85
51821--51846	13	2.0	13	100	0	52	30	15	30	23	1.95
52996--53020	12	2.1	12	100	0	50	24	36	24	16	1.94
53093--53133	18	2.3	18	91	0	64	48	19	4	26	1.69
53240--53283	18	2.4	18	88	0	61	13	2	43	40	1.57
57847--57916	33	2.1	33	94	0	122	21	22	22	32	1.98
57880--57972	41	2.3	41	88	0	141	24	19	18	37	1.94
60001--60139	73	1.9	73	96	0	260	36	10	7	45	1.67
62415--62576	82	2.0	82	85	2	218	50	6	2	41	1.41
70297--70328	12	2.7	12	95	0	55	43	21	21	12	1.86
71781--71853	29	2.4	29	86	4	92	27	13	12	46	1.79
88367--88402	17	2.1	17	89	0	54	44	5	0	50	1.25
89506--89568	30	2.1	30	96	0	117	23	3	15	57	1.53
92825--92870	22	2.1	22	100	0	92	32	8	30	28	1.87
94224--94263	20	2.0	20	90	9	64	50	2	2	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94283--94315	17	2.0	17	94	5	59	45	0	0	54	0.99
94572--94613	22	2.0	21	85	4	57	66	7	7	19	1.39
99753--99782	15	1.9	16	93	6	53	13	26	0	60	1.34
99997--100066	35	2.0	36	85	2	97	38	17	12	31	1.87
99898--100501	301	2.0	302	95	1	1095	39	12	10	37	1.77
110878--111026	41	3.7	40	89	4	201	23	27	20	28	1.99
119501--119525	10	2.5	10	100	0	50	60	0	0	40	0.97
129399--129460	29	2.2	30	82	8	76	56	1	1	40	1.19
142184--142260	19	3.7	21	76	13	68	41	15	5	37	1.70
142184--142241	22	2.6	22	81	7	64	41	17	5	36	1.72
142220--142272	19	2.8	19	88	0	88	37	13	9	39	1.77
142524--142561	19	2.0	20	94	5	69	28	18	5	47	1.70
149289--149358	24	3.0	23	72	2	59	50	15	7	27	1.70
152894--153055	40	4.1	40	100	0	324	39	12	7	40	1.72
169619--169746	37	3.5	37	88	2	177	18	17	30	33	1.94
173433--173466	17	2.0	17	88	11	52	76	0	23	0	0.79
173489--173556	32	2.1	32	100	0	136	26	17	11	44	1.83
176109--176221	42	2.7	42	77	2	120	23	18	38	19	1.93
178253--178316	23	2.7	23	76	11	67	67	1	0	31	1.00
178589--178627	19	2.1	19	85	9	53	43	2	0	53	1.14
191643--191705	27	2.3	28	94	2	110	55	9	14	20	1.67
192839--192889	23	2.3	22	80	10	59	58	3	0	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192871--192914	18	2.4	18	81	7	54	54	2	2	40	1.25
196656--196730	36	2.1	35	87	4	107	28	9	26	36	1.87
199380--199426	22	2.0	24	84	15	64	61	2	0	36	1.08
199365--199640	134	2.0	135	98	1	536	51	8	7	32	1.60
199509--199560	22	2.2	24	83	12	65	61	3	0	34	1.14
201700--201739	3	13.3	3	87	10	55	0	62	0	37	0.95
212760--212790	9	3.3	9	95	4	53	25	32	41	0	1.56
215220--215400	96	1.9	96	91	4	303	38	2	18	40	1.63
215432--215727	126	2.4	126	90	1	470	33	17	19	29	1.95
218319--219526	604	2.0	604	100	0	2416	34	16	12	36	1.86
235563--235602	21	1.9	21	84	0	53	55	7	2	35	1.42
238499--238763	129	2.1	130	98	1	516	35	10	15	38	1.82
240010--240169	83	2.0	83	83	3	209	45	6	6	41	1.56
257490--257541	15	3.5	15	86	0	68	11	69	1	17	1.27
268187--268286	44	2.3	44	82	0	119	34	21	21	24	1.97
268144--268612	187	2.5	185	83	4	577	32	20	19	27	1.97
268539--268740	44	4.4	43	69	16	147	30	19	21	28	1.98
268100--268706	94	6.5	92	70	15	334	32	19	19	28	1.96
268234--268845	139	4.4	138	72	11	381	32	20	20	27	1.97
268698--268984	94	3.0	93	78	2	313	34	19	20	25	1.96
270515--270555	20	2.0	21	90	4	66	24	4	4	65	1.32
280916--281059	21	6.9	21	68	5	85	18	21	17	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280930--281059	42	3.1	42	85	3	145	17	21	18	42	1.89
280894--281027	63	2.1	63	79	2	144	16	24	17	41	1.90
286131--286166	18	2.0	18	94	0	63	33	25	5	36	1.79
295588--295650	31	2.0	31	96	0	117	46	14	6	33	1.70
299417--299490	31	2.4	31	93	0	121	25	9	13	51	1.71
310341--310369	2	14.5	2	100	0	58	48	0	0	51	1.00
312384--312421	17	2.2	17	90	0	58	60	5	2	31	1.33
312962--313002	21	2.0	21	90	9	66	24	12	9	53	1.68
313336--313378	20	2.2	19	87	8	59	39	2	2	55	1.25
313341--313378	20	1.9	20	94	0	67	42	2	2	52	1.29
317404--317615	103	2.1	102	92	1	354	33	5	4	57	1.40
318070--318121	24	2.2	24	89	0	77	34	1	9	53	1.45
320522--320574	12	4.2	12	74	9	52	39	11	0	49	1.39
320763--320983	113	2.0	113	99	0	433	42	7	7	42	1.61
324754--325072	68	4.7	68	78	0	298	25	20	18	36	1.95
328281--328353	22	3.3	21	77	9	74	31	19	28	20	1.97
328293--328354	22	2.8	22	82	0	79	30	20	27	20	1.98
330267--330325	25	2.3	25	85	8	75	44	28	11	15	1.82
330885--330949	25	2.6	25	92	0	103	27	23	20	29	1.98
331159--331193	2	17.5	2	100	0	70	48	0	0	51	1.00
334326--334383	19	3.2	17	81	13	64	37	1	10	50	1.47
334327--334421	22	4.6	19	74	15	64	41	1	14	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336957--337069	42	2.7	41	81	5	113	43	19	23	14	1.87
336974--337119	42	3.5	42	77	7	134	43	17	21	17	1.88
341265--341299	2	17.5	2	100	0	70	48	0	0	51	1.00
344432--344489	19	3.2	17	81	13	64	37	1	10	50	1.47
344433--344527	22	4.6	19	74	15	64	41	1	14	43	1.53
347063--347175	42	2.7	41	81	5	113	43	19	23	14	1.87
347080--347225	42	3.5	42	77	7	134	43	17	21	17	1.88
349947--349990	17	2.8	16	86	10	63	47	0	2	50	1.13
350897--351027	68	1.9	68	93	0	226	44	19	14	22	1.86
357690--357745	29	2.0	29	82	6	71	19	8	8	62	1.51
358823--358867	21	2.1	21	83	4	54	24	24	26	24	2.00
364085--364153	27	2.6	28	81	9	90	23	40	10	26	1.86
364085--364129	14	3.3	14	78	6	56	20	42	11	26	1.85
366606--366637	12	2.5	13	90	10	57	62	9	0	28	1.26
369455--369488	16	2.1	16	88	0	50	23	11	32	32	1.91
373185--373303	42	2.8	43	82	10	145	35	27	14	22	1.93
373651--373741	43	2.1	43	83	2	112	45	7	10	36	1.68
385143--385277	7	19.0	7	74	8	67	42	37	1	18	1.60
385963--385992	13	2.2	14	94	5	53	53	26	0	20	1.46
386142--386246	40	2.7	37	78	12	111	20	19	23	36	1.95
386171--386249	40	2.0	40	89	0	122	21	17	24	36	1.94
393012--393039	14	2.0	14	100	0	56	71	0	14	14	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400636--400661	1	26.0	1	100	0	52	0	0	0	100	0.00
400965--401010	5	9.4	5	92	4	76	19	39	23	17	1.92
406629--406842	42	5.0	42	79	6	216	22	9	12	55	1.66
406630--406826	21	9.0	23	64	15	71	22	9	12	55	1.65
406630--406822	89	2.2	84	83	8	246	22	9	12	55	1.64
408844--408891	24	2.0	24	87	0	69	45	10	25	18	1.81
409741--409849	41	2.6	41	89	1	164	23	28	21	26	1.99
412119--412230	42	2.7	42	92	0	179	14	19	19	46	1.84
412158--412225	21	3.2	21	70	0	73	14	17	19	48	1.81
415827--415967	44	3.2	44	91	0	237	24	22	23	29	1.99

Tables:   1   2   3