genome.fa.s2091.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold321
Parameters: 2 7 7 80 10 50 1000
Length:  1029294

Tables:   1   2   3   

This is table  2  of  3  ( 319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432103--432178	35	2.2	35	92	0	125	43	14	15	26	1.85
433879--433932	21	2.8	19	81	15	58	64	5	0	29	1.16
437848--437881	9	3.8	9	96	0	59	44	17	11	26	1.83
438097--438145	26	1.9	25	91	4	80	22	28	0	48	1.50
445152--445188	19	1.9	19	94	0	65	43	5	18	32	1.73
449310--449468	44	3.6	44	78	5	144	26	23	21	28	1.99
449696--449730	15	2.3	15	90	0	52	37	42	5	14	1.69
449609--449817	102	2.0	102	85	0	283	25	27	21	25	1.99
449711--450495	87	9.0	87	92	0	1291	24	25	22	28	2.00
451923--452032	6	18.8	6	77	13	79	12	4	12	70	1.32
451948--452014	28	2.3	29	87	5	91	10	5	10	73	1.25
452029--452063	13	2.6	13	86	4	52	0	22	0	77	0.78
460555--460604	3	16.7	3	100	0	100	32	0	0	68	0.90
461672--461923	125	2.0	125	98	0	486	25	18	15	41	1.89
475720--475809	39	2.2	41	84	3	112	54	4	2	38	1.33
478587--478636	3	16.7	3	100	0	100	32	0	0	68	0.90
483973--484006	18	1.9	18	88	5	52	35	20	5	38	1.77
484777--484846	35	2.0	35	88	0	104	34	17	14	34	1.90
484937--484961	2	12.5	2	100	0	50	52	0	0	48	1.00
487500--487538	13	2.9	14	84	7	62	20	25	5	48	1.70
487784--487827	20	2.1	21	83	4	54	22	31	0	45	1.53
487910--487967	16	3.6	17	72	27	56	29	37	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488501--488537	11	3.5	11	78	14	51	43	21	24	10	1.84
488496--488537	20	2.1	20	100	0	84	42	19	23	14	1.87
489143--489167	12	2.1	12	100	0	50	16	24	36	24	1.94
489880--489915	1	36.0	1	100	0	72	0	0	0	100	0.00
492682--492782	19	5.3	19	89	0	148	38	13	7	39	1.74
492672--492775	38	2.7	38	95	0	181	38	12	8	40	1.74
503113--503259	33	4.4	33	68	23	117	15	20	30	33	1.94
503183--503236	27	2.0	28	88	3	83	14	24	31	29	1.95
510804--510856	7	7.1	7	87	8	70	47	39	0	13	1.43
510804--510856	15	3.5	15	90	7	81	47	39	0	13	1.43
510806--510853	8	6.2	8	90	7	73	52	35	0	12	1.40
510806--510853	23	2.1	23	96	0	87	52	35	0	12	1.40
511554--511593	19	2.1	19	85	0	53	17	32	32	17	1.93
513080--513166	36	2.5	36	85	5	117	35	37	11	14	1.83
513073--513226	33	4.5	33	83	3	137	38	36	10	14	1.80
518213--518263	13	3.9	13	80	10	68	31	7	25	35	1.85
518213--518264	26	2.0	27	88	3	79	32	7	25	34	1.84
518567--518654	28	3.1	28	81	3	104	39	15	3	40	1.64
519109--519180	24	3.0	24	100	0	144	37	16	25	20	1.93
520011--520049	19	2.1	19	90	9	62	53	23	23	0	1.46
520026--520142	25	5.0	24	75	14	118	50	23	22	3	1.64
520029--520124	50	1.9	50	86	0	138	51	23	21	3	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520099--520142	19	2.3	19	80	0	52	47	20	25	6	1.74
537722--537775	28	1.9	28	100	0	108	27	16	14	40	1.88
568789--568846	26	2.2	27	87	3	82	22	18	29	29	1.98
575506--575570	33	1.9	34	87	9	98	61	3	0	35	1.12
575507--575587	34	2.4	36	79	10	98	62	3	1	32	1.20
576020--576057	20	1.9	20	88	0	58	47	10	0	42	1.38
589710--589796	42	2.0	43	86	4	122	49	2	22	25	1.62
599165--599212	18	2.8	16	78	12	51	22	0	4	72	1.01
601686--601733	10	4.9	10	90	9	73	22	14	0	62	1.32
601686--601733	15	3.3	15	91	8	73	22	14	0	62	1.32
601973--602016	22	2.0	21	83	12	54	15	9	0	75	1.05
602108--602139	13	2.4	14	90	10	50	25	12	0	62	1.30
602168--602211	13	3.4	13	81	9	54	20	2	4	72	1.13
605697--605799	41	2.5	41	85	3	136	29	19	22	29	1.98
606845--606906	12	5.4	12	70	18	51	17	1	8	72	1.17
614097--614169	37	2.0	37	89	2	112	31	23	0	45	1.53
620271--620636	130	2.8	130	79	2	376	38	10	11	39	1.76
620260--620659	131	3.1	130	78	2	399	38	10	11	40	1.75
626199--626249	19	2.6	19	76	17	52	35	0	3	60	1.15
626858--626924	29	2.2	30	81	5	82	38	4	10	46	1.59
634327--634357	4	7.8	4	100	0	62	25	48	0	25	1.52
634931--634998	12	5.7	12	88	10	70	47	0	50	2	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634926--634987	2	32.0	2	87	6	92	46	0	50	3	1.17
645267--645551	129	2.2	129	88	3	416	34	0	39	24	1.61
660072--660154	26	3.2	26	84	1	87	36	22	21	19	1.95
660092--660154	25	2.5	26	84	2	83	36	23	20	19	1.95
664866--664903	16	2.4	16	100	0	76	18	28	39	13	1.88
667179--667239	28	2.2	29	79	8	81	29	21	24	24	1.99
667151--667255	33	3.3	32	73	18	87	27	22	23	25	2.00
667351--667429	26	2.9	28	81	7	90	41	21	15	21	1.89
667600--667666	29	2.4	27	90	9	116	19	17	16	46	1.85
671638--672399	379	2.0	379	95	1	1359	33	13	17	35	1.89
674621--674671	16	3.4	16	78	15	72	45	3	19	31	1.69
676778--676826	25	2.0	25	84	8	64	14	30	22	32	1.93
676790--676869	25	3.2	25	81	0	97	16	27	17	38	1.91
679607--679646	20	2.0	21	85	5	55	35	5	2	57	1.34
680681--680724	23	1.9	23	86	9	63	13	13	6	65	1.44
680823--680856	16	2.1	17	88	5	52	17	11	2	67	1.34
683998--684062	30	2.2	30	83	5	78	27	27	23	21	1.99
691633--691657	12	2.1	12	100	0	50	28	16	40	16	1.89
698050--698581	263	2.0	263	95	0	965	37	15	22	25	1.93
702609--702685	31	2.5	31	97	0	145	20	11	36	31	1.89
716925--716962	19	2.0	19	100	0	76	36	15	10	36	1.82
717289--718305	132	7.7	132	94	0	1696	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719850--719895	6	8.0	6	86	13	62	0	0	13	86	0.56
719850--719895	17	2.8	16	90	6	65	0	0	13	86	0.56
719855--719892	8	4.6	8	87	6	58	0	0	10	89	0.49
724321--724358	19	2.0	19	100	0	76	36	15	10	36	1.82
736607--736647	16	2.6	16	100	0	82	46	0	0	53	1.00
738978--739030	26	2.0	26	100	0	106	43	11	11	33	1.76
739041--739086	24	1.9	24	86	0	65	50	6	4	39	1.48
741009--741061	24	2.2	24	86	0	70	50	7	3	37	1.49
742733--742772	22	1.9	22	90	10	66	37	0	17	45	1.49
743475--743552	36	2.2	36	88	0	111	26	8	29	34	1.87
749871--749911	6	6.8	6	97	0	73	53	0	12	34	1.38
760444--760496	27	2.0	27	84	0	70	45	18	16	18	1.86
774193--774252	29	2.1	29	90	0	93	31	21	15	31	1.94
778036--778066	15	2.1	14	94	5	53	70	0	0	29	0.87
782314--782380	20	3.5	19	86	6	82	56	8	1	32	1.39
782346--782387	16	2.5	17	82	14	52	50	7	0	42	1.30
784037--784140	44	2.3	43	77	4	109	36	10	3	49	1.56
784091--784122	17	1.9	16	93	6	55	43	0	6	50	1.27
787455--787501	24	2.0	23	91	4	76	6	21	2	70	1.20
792841--792939	42	2.4	42	89	3	146	38	17	19	25	1.93
793033--793062	8	3.8	8	100	0	60	26	26	0	46	1.53
793946--793985	21	1.9	21	85	10	55	35	12	0	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800166--800420	125	2.0	128	93	3	444	44	14	6	34	1.72
802188--802481	134	2.2	134	82	4	360	41	20	18	19	1.91
802188--802481	27	10.9	27	84	3	335	41	20	18	19	1.91
805399--805528	44	2.9	45	85	7	176	35	16	7	40	1.77
807120--807146	14	1.9	14	100	0	54	33	0	0	66	0.92
808635--808697	31	2.1	30	85	8	83	31	14	7	46	1.73
809087--809132	15	3.4	14	82	8	51	15	0	6	78	0.95
810344--810388	3	14.7	3	86	4	63	33	2	2	62	1.20
810419--810452	16	2.1	16	88	5	50	11	0	2	85	0.71
815211--815240	8	3.8	8	100	0	60	80	10	0	10	0.92

Tables:   1   2   3