genome.fa.s2120.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold256
Parameters: 2 7 7 80 10 50 1000
Length:  726231

Tables:   1   2   3   

This is table  2  of  3  ( 348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192233--192278	7	6.6	7	78	16	51	60	10	0	28	1.30
192233--192278	15	3.3	15	82	11	62	60	10	0	28	1.30
192274--192331	21	2.8	20	84	7	80	43	17	3	36	1.66
192317--192344	14	2.0	14	100	0	56	50	7	0	42	1.30
192353--192500	9	16.7	9	79	5	158	50	16	1	32	1.54
195077--195407	29	11.3	29	82	8	393	45	23	0	30	1.55
195082--195423	118	2.9	118	84	6	406	46	23	0	30	1.53
195077--195453	88	4.2	88	84	7	440	45	22	0	31	1.55
195334--195453	35	3.6	34	84	12	144	45	19	0	35	1.50
195077--195453	29	12.7	28	82	9	299	45	22	0	31	1.55
201216--201495	124	2.2	125	86	6	390	31	22	16	30	1.96
201689--201747	29	2.1	27	84	9	75	44	15	15	25	1.85
201771--201838	9	7.8	9	74	12	70	42	20	0	36	1.52
201837--201898	25	2.5	25	94	0	106	46	22	1	29	1.61
202048--202087	21	1.9	21	94	0	71	30	20	47	2	1.63
202499--202641	41	3.5	41	89	0	214	23	17	21	37	1.94
210905--210950	20	2.3	20	81	3	58	43	2	2	52	1.25
212199--212250	26	2.0	26	96	0	95	30	17	11	40	1.85
212388--212491	51	2.1	50	92	3	174	29	8	20	41	1.82
224041--224083	22	2.0	22	85	0	59	65	0	18	16	1.28
228364--228518	46	3.5	46	90	4	246	33	14	23	28	1.94
229469--229520	24	2.2	24	82	6	61	42	7	34	15	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230351--230392	18	2.3	18	87	0	66	21	19	21	38	1.94
237992--238048	26	2.1	27	83	3	71	28	1	5	64	1.25
238011--238255	124	2.0	124	89	0	375	23	17	23	36	1.95
239791--239824	14	2.4	14	90	0	50	35	17	2	44	1.64
248020--248058	19	2.1	19	85	9	53	43	0	2	53	1.14
248014--248133	33	3.6	33	67	22	97	45	2	4	48	1.35
248020--248156	68	2.0	69	98	1	267	41	4	5	48	1.47
254509--254542	18	1.9	18	94	5	61	76	2	2	17	1.04
254647--254761	10	11.5	10	73	17	87	65	0	34	0	0.93
254639--254768	25	5.4	25	79	15	157	64	0	35	0	0.94
254639--254758	45	2.7	45	97	0	222	65	0	35	0	0.93
254626--254751	20	6.2	20	81	16	143	64	0	35	0	0.94
254873--254927	28	2.0	27	86	6	76	30	3	5	60	1.37
255015--255049	17	2.1	17	88	0	52	74	2	0	22	0.95
255190--255455	129	2.0	131	91	1	428	52	7	10	29	1.63
255336--255382	13	3.6	13	77	11	51	61	4	6	27	1.39
255319--255866	153	3.6	152	93	2	893	52	7	9	30	1.62
256143--256216	29	2.5	29	84	4	94	24	14	14	45	1.83
257088--257121	3	11.3	3	87	0	50	0	29	0	70	0.87
257684--257716	16	2.1	16	88	11	50	54	6	30	9	1.56
257759--257811	21	2.5	20	82	11	70	66	5	26	1	1.25
266161--266271	45	2.5	46	82	4	136	22	17	15	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267381--267434	13	4.1	13	78	4	63	37	22	7	33	1.82
270752--270813	29	2.1	30	85	8	83	41	9	11	37	1.74
274332--274420	40	2.2	40	82	11	119	31	8	11	48	1.70
292672--292891	111	2.0	111	86	1	309	30	13	19	36	1.90
292885--292928	22	2.0	22	100	0	88	45	9	22	22	1.80
292788--293034	129	1.9	129	94	2	433	32	13	21	32	1.92
292906--293154	106	2.4	105	90	2	392	32	14	20	32	1.93
304484--304573	26	3.3	26	66	22	67	46	15	16	21	1.84
306838--306904	33	2.0	33	100	0	134	47	19	11	20	1.81
314918--314962	18	2.4	19	85	3	56	48	2	2	46	1.26
316166--316246	41	2.0	41	100	0	162	16	19	14	49	1.80
321189--321220	13	2.3	15	89	10	50	3	9	3	84	0.84
331800--331840	2	20.5	2	94	0	73	53	46	0	0	1.00
337118--337161	20	2.2	20	87	0	61	50	11	2	36	1.51
337119--337153	18	1.9	18	88	0	52	51	11	2	34	1.53
340385--340425	21	2.0	21	100	0	82	39	21	19	19	1.93
354278--354390	56	2.0	56	87	3	165	37	16	5	40	1.72
355354--355502	76	2.0	76	97	0	280	34	17	2	46	1.60
355518--355566	18	2.7	18	78	6	55	46	10	0	42	1.37
360175--360209	15	2.4	15	90	4	54	48	0	8	42	1.33
360797--360854	28	2.1	28	96	0	107	32	22	13	31	1.93
365856--366044	50	3.8	50	85	2	240	21	29	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368805--368845	21	1.9	22	85	5	57	7	17	2	73	1.17
369760--369806	21	2.3	20	82	10	60	31	8	10	48	1.68
369791--369830	19	2.2	18	86	4	53	37	7	7	47	1.60
370003--370048	18	2.6	18	85	0	65	39	10	2	47	1.51
372890--372936	15	3.1	15	81	0	67	68	2	0	29	1.02
372922--373011	36	2.5	36	77	13	96	54	11	0	34	1.36
373593--373659	25	2.7	25	78	15	77	29	0	1	68	0.98
373645--373678	16	2.1	16	89	10	52	41	2	0	55	1.15
381552--381615	17	3.6	17	70	15	58	29	14	10	45	1.78
381544--381614	36	2.0	36	94	0	124	28	14	12	45	1.81
386636--386680	17	2.6	17	92	0	72	31	13	8	46	1.74
400999--401058	14	4.3	13	74	17	50	53	10	3	33	1.51
400980--401053	29	2.5	30	86	4	96	52	9	4	33	1.53
412487--413003	258	2.0	259	99	0	1027	34	12	11	41	1.78
413424--413493	31	2.3	30	83	9	90	52	12	4	30	1.58
415674--415726	22	2.5	22	81	3	54	54	3	0	41	1.18
416139--416167	8	3.8	8	90	9	51	55	0	0	44	0.99
423254--423348	50	1.9	50	88	0	145	41	12	16	29	1.86
425706--425740	3	11.7	3	87	0	52	0	40	0	60	0.97
429462--429954	246	2.0	247	99	0	979	48	13	5	32	1.66
438885--438937	26	2.0	26	100	0	106	33	15	7	43	1.74
446679--446835	48	3.2	48	85	3	199	36	28	12	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446689--446921	53	4.6	53	83	5	220	34	28	14	23	1.93
451811--451868	21	2.8	21	76	10	73	18	25	15	39	1.91
451761--451895	42	3.2	43	80	4	132	16	20	16	46	1.84
454185--454351	85	2.0	85	85	0	226	27	17	16	38	1.91
458527--458558	10	3.4	10	83	16	50	9	12	0	78	0.97
458519--458563	18	2.5	18	92	7	74	11	8	2	77	1.07
467709--467954	91	2.7	90	83	7	277	34	17	9	38	1.82
468106--468159	26	2.1	26	85	0	72	57	0	1	40	1.09
468121--468172	26	2.0	26	84	3	68	55	0	1	42	1.10
468452--468497	22	2.1	22	84	8	58	26	4	4	65	1.30
468483--468522	21	1.9	21	84	0	53	37	2	0	60	1.11
468693--468858	92	1.8	89	84	6	226	36	5	17	40	1.73
468682--468880	92	2.2	89	79	6	220	38	6	17	37	1.76
468719--468914	92	2.1	91	80	5	214	34	8	15	41	1.77
470909--470946	12	3.0	13	76	7	51	26	2	7	63	1.35
470903--470965	25	2.6	25	82	2	83	28	7	6	57	1.52
479509--479568	3	19.7	3	76	10	50	28	3	1	66	1.17
479509--479571	21	3.1	21	75	11	69	28	3	1	66	1.16
479509--479572	9	6.8	9	76	13	58	28	3	1	67	1.15
481890--481943	24	2.2	24	83	0	63	33	22	25	18	1.97
481969--482058	26	3.5	27	76	7	89	31	23	26	18	1.98
486434--486531	48	2.0	48	98	0	187	35	24	14	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492398--492430	12	2.8	12	100	0	66	15	30	18	36	1.91
495399--495439	21	2.0	21	85	9	57	68	0	2	29	1.03
496131--496155	13	1.9	13	100	0	50	32	0	0	68	0.90
502907--502931	13	1.9	13	100	0	50	40	0	0	60	0.97
505013--505213	41	4.9	41	88	3	271	20	22	29	26	1.99
505013--505213	82	2.5	82	90	1	305	20	22	29	26	1.99
507800--507825	2	13.0	2	100	0	52	50	0	0	50	1.00
510156--510255	50	2.0	51	94	2	175	34	12	4	50	1.58
511097--511310	91	2.4	91	86	1	286	39	15	14	30	1.88
514758--514789	12	2.7	12	100	0	64	62	0	0	37	0.95

Tables:   1   2   3