genome.fa.s2120.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold256
Parameters: 2 7 7 80 10 50 1000
Length:  726231

Tables:   1   2   3   

This is table  3  of  3  ( 348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520672--520715	21	2.1	21	86	0	61	47	0	0	52	1.00
527759--527791	14	2.3	15	90	10	52	3	12	0	84	0.72
528440--528501	31	2.0	31	96	0	115	30	25	16	27	1.96
530936--531057	40	3.1	39	95	4	217	22	20	9	46	1.80
537264--537369	53	2.0	54	94	1	187	38	25	17	17	1.92
542284--542431	4	37.8	4	69	23	52	68	0	31	0	0.95
542294--542374	29	2.7	31	79	17	84	70	0	28	1	0.95
542284--542429	10	13.8	11	71	21	82	68	0	30	0	0.95
542756--543389	307	2.0	312	88	4	951	50	7	10	31	1.64
542783--543334	156	3.5	152	76	13	534	51	6	10	30	1.62
545416--545455	9	4.4	9	90	0	62	42	20	10	27	1.83
545416--545460	18	2.4	18	85	3	63	42	20	11	26	1.85
548311--548446	43	3.2	42	77	15	120	50	12	4	32	1.60
548610--548646	10	3.6	10	88	3	56	0	29	0	70	0.88
551589--551640	22	2.4	22	87	6	70	17	26	21	34	1.95
564401--564445	12	3.9	12	80	16	51	55	0	8	35	1.31
564813--565311	87	5.8	84	77	9	415	24	21	21	32	1.98
564813--565352	44	12.6	42	75	9	299	24	22	21	31	1.98
564892--565352	44	10.7	43	78	6	330	24	22	21	31	1.98
564895--565180	126	2.2	126	83	4	349	24	21	22	32	1.98
564861--565352	175	2.9	174	87	4	646	24	22	21	31	1.98
564976--565357	131	2.9	130	82	3	401	25	23	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565661--566012	134	2.6	133	95	1	616	27	23	20	28	1.99
565709--566763	44	23.8	43	71	11	243	27	23	19	29	1.98
565945--566452	221	2.3	218	91	4	790	29	21	19	29	1.98
566385--566763	134	2.8	134	97	0	713	27	23	20	28	1.99
566421--566785	90	4.1	89	66	14	212	26	24	19	29	1.99
566562--566792	44	5.3	42	71	11	124	26	25	19	28	1.99
568168--568223	7	8.3	7	82	7	71	16	14	0	69	1.19
568168--568223	20	2.8	20	86	0	85	16	14	0	69	1.19
569142--569254	40	2.8	40	76	11	124	12	10	5	71	1.29
569908--569963	25	2.1	28	77	12	64	55	7	16	21	1.64
577368--577785	86	4.9	84	76	5	245	30	20	17	32	1.96
577609--577904	86	3.5	85	78	3	263	32	21	17	28	1.96
586347--586387	18	2.2	19	86	4	57	73	0	17	9	1.09
587677--587722	22	2.1	22	84	8	58	63	0	4	32	1.14
594536--594565	15	2.0	15	100	0	60	73	0	0	26	0.84
597204--597229	3	8.7	3	100	0	52	30	0	0	69	0.89
603092--603130	21	1.9	20	89	5	60	41	7	23	28	1.82
603339--603402	9	7.1	9	73	18	53	32	1	0	65	1.02
603339--603404	18	3.7	18	84	6	71	34	1	0	63	1.04
603408--603464	19	3.1	19	85	12	66	35	0	7	57	1.26
603351--603621	137	2.0	136	93	2	463	34	1	5	58	1.29
603505--603574	27	2.6	27	75	4	79	44	0	1	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603545--603581	19	2.0	19	89	5	58	40	0	5	54	1.24
604788--605168	168	2.2	170	82	5	450	32	14	14	39	1.86
608440--608650	109	1.9	109	96	0	386	24	20	14	40	1.90
615347--615385	19	2.0	20	90	5	62	51	5	5	38	1.46
621748--621868	33	3.4	33	70	16	116	28	11	18	42	1.85
621744--621891	74	2.0	74	98	0	287	27	12	19	40	1.87
624108--624279	64	2.7	64	94	0	308	41	19	12	27	1.87
627811--627844	18	2.0	17	88	11	52	70	0	0	29	0.87
630811--630851	17	2.5	17	80	11	50	60	0	2	36	1.10
630890--630922	15	2.2	15	94	0	57	54	0	0	45	0.99
638928--638967	20	2.0	20	90	4	64	50	5	10	35	1.58
638928--638976	19	2.5	20	87	6	66	46	4	10	38	1.57
638938--638976	20	2.0	20	90	5	62	48	2	7	41	1.45
639087--639119	16	2.1	15	94	5	57	75	0	24	0	0.80
639772--639818	24	2.0	24	84	16	62	34	0	14	51	1.43
641307--641354	24	2.0	24	84	8	62	45	0	14	39	1.45
641722--641868	76	2.0	74	80	2	168	36	4	15	43	1.68
644516--644571	22	2.5	22	97	2	103	41	0	26	32	1.56
646892--646976	19	4.6	18	73	21	59	63	3	3	29	1.28
646902--646955	21	2.7	19	78	10	63	64	1	0	33	1.04
646902--646956	10	5.5	10	71	16	51	63	1	0	34	1.05
647010--647663	326	2.0	327	99	0	1301	33	19	11	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648051--648089	20	2.0	20	100	0	78	38	0	0	61	0.96
653266--653329	22	2.8	22	81	11	67	57	0	0	42	0.98
655379--655403	11	2.3	11	100	0	50	24	0	28	48	1.52
666791--666830	18	2.2	18	86	8	55	67	7	0	25	1.16
668270--668344	17	4.5	17	70	25	54	58	0	5	36	1.21
672015--672295	42	6.6	43	78	5	243	33	20	20	24	1.97
672274--672392	42	2.8	42	85	0	157	24	25	18	31	1.97
672112--672345	84	2.8	84	81	2	211	32	22	19	24	1.97
692784--692845	21	3.0	21	80	4	72	37	22	38	1	1.64
693296--693588	42	7.0	42	89	4	396	24	18	22	34	1.96
693678--693720	22	2.0	22	90	0	68	48	27	13	9	1.73
694961--694986	8	3.2	8	100	0	52	34	0	0	65	0.93
695700--695799	11	10.1	10	72	22	79	44	2	0	54	1.11
695684--695832	38	3.7	37	79	13	145	38	1	0	59	1.11
695712--695767	27	2.0	27	89	6	85	41	1	0	57	1.09
696599--696677	29	2.7	30	80	11	92	43	10	13	32	1.78
699513--699906	197	2.0	197	100	0	788	26	20	15	38	1.92
706100--706235	51	2.7	51	75	4	132	27	15	27	29	1.96
706100--706288	102	1.9	102	87	4	283	28	15	26	29	1.96
710485--710751	89	3.0	89	83	4	304	36	17	10	34	1.85
711250--711334	29	2.8	30	75	10	77	63	1	4	30	1.22
711185--711340	9	16.3	9	66	23	54	62	1	6	29	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711294--711340	19	2.4	19	82	3	58	70	0	4	25	1.05
712254--712338	29	2.8	30	75	10	77	63	1	4	30	1.22
712189--712344	9	16.3	9	66	23	54	62	1	6	29	1.31
712298--712344	19	2.4	19	82	3	58	70	0	4	25	1.05
712772--712965	90	2.1	94	81	5	225	41	8	17	32	1.79
714965--715830	251	3.5	248	88	3	1247	31	16	17	34	1.92
720226--720300	21	3.6	21	87	0	87	21	10	38	29	1.87
720373--720520	30	5.0	30	78	4	149	34	23	4	37	1.74
720855--720948	7	13.3	7	80	8	75	74	0	25	0	0.82
720853--720948	14	6.8	14	79	13	83	73	0	26	0	0.83
720853--720927	8	8.0	9	77	16	57	73	0	26	0	0.84
721229--721258	8	3.6	8	91	8	51	80	0	20	0	0.72
721224--721268	18	2.6	18	89	3	65	82	0	17	0	0.68
721228--721272	17	2.5	18	85	10	65	80	0	20	0	0.72
721609--721649	22	1.9	21	90	5	64	39	12	9	39	1.76
721590--721666	39	2.1	36	85	7	100	37	7	12	41	1.73
721587--721893	17	17.4	18	75	14	248	30	11	12	45	1.77
721587--721919	35	9.4	34	75	9	244	30	12	12	45	1.77
721587--721954	17	21.1	17	72	13	239	31	11	11	45	1.77
725429--725480	7	7.1	7	91	8	86	42	44	0	13	1.44

Tables:   1   2   3

The End!