Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold220
Parameters: 2 7 7 80 10 50 1000
Length:  1016241

Tables:   1   2   3   4   

This is table  4  of  4  ( 400 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
864220--864280
28
2.2
28
96
0
113
44
6
6
42
1.56
868643--868716
36
2.1
36
81
0
85
48
8
18
24
1.75
881791--881852
31
2.0
31
100
0
124
64
16
3
16
1.42
894775--894812
2
19.5
2
94
5
69
50
0
0
50
1.00
895497--895694
109
1.8
106
86
3
288
33
19
17
29
1.94
895961--895994
4
8.5
4
93
0
59
70
0
2
26
1.01
898313--898352
6
6.7
6
83
11
55
47
0
0
52
1.00
902387--902417
9
3.4
9
90
0
53
25
12
22
38
1.90
902548--902590
21
2.0
21
82
8
52
20
37
0
41
1.53
903290--903315
5
5.2
5
100
0
52
19
19
19
42
1.90
910950--911001
24
2.2
24
85
0
68
48
9
3
38
1.54
925067--925108
22
1.9
22
100
0
84
35
4
33
26
1.77
934508--934540
2
16.5
2
100
0
66
48
0
0
51
1.00
940575--940614
20
2.0
20
85
0
53
50
7
10
32
1.64
942055--942140
25
3.4
25
73
6
91
32
25
22
19
1.97
951033--951109
35
2.2
35
85
2
100
28
7
28
35
1.85
951864--951927
3
21.3
3
100
0
128
67
32
0
0
0.91
953804--953858
20
2.8
19
75
5
56
45
0
3
50
1.19
953816--953877
30
2.1
30
81
6
72
41
1
6
50
1.38
963307--963483
45
4.0
44
78
5
196
26
14
23
35
1.93
963319--963483
90
1.9
88
85
2
231
26
14
24
34
1.94
971002--971438
120
3.7
120
93
3
735
42
1
4
51
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
971185--971366
28
6.4
28
70
14
113
43
0
2
53
1.19
971647--971671
12
2.1
12
100
0
50
52
32
0
16
1.44
971683--971751
16
4.3
16
90
0
102
23
33
5
37
1.79
977639--977778
50
2.8
50
84
0
163
28
22
27
21
1.99
983453--983491
20
2.0
20
90
10
62
56
5
23
15
1.59
987747--987798
26
1.9
27
84
7
70
25
3
3
67
1.25
988079--988168
30
3.0
30
83
6
110
43
13
7
35
1.73
988859--988886
13
2.2
13
100
0
56
0
14
21
64
1.29
991181--991252
28
2.6
28
93
4
119
48
8
13
29
1.72
994956--994997
15
2.7
16
82
14
52
45
0
2
52
1.13
994947--994988
15
2.9
15
82
10
52
47
0
0
52
1.00
999711--999760
25
2.0
25
96
0
91
30
16
8
46
1.75
1000031--1000203
43
4.0
43
100
0
346
35
9
4
50
1.55
1002395--1002419
11
2.3
11
100
0
50
32
0
28
40
1.57
1012624--1012671
20
2.5
20
90
10
73
2
14
16
66
1.34
1013226--1013294
34
2.0
34
97
0
129
44
17
10
27
1.80
1014831--1015073
43
5.7
43
77
8
212
30
30
16
23
1.96
1014849--1015031
84
2.2
86
82
6
230
29
32
18
20
1.96

Tables:   1   2   3   4

The End!