genome.fa.s2527.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold307
Parameters: 2 7 7 80 10 50 1000
Length:  546686

Tables:   1   2   

This is table  2  of  2  ( 218 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290678--290751	18	4.4	17	70	16	55	72	5	4	17	1.19
297894--298160	68	4.0	68	82	2	306	22	21	19	37	1.95
297894--298157	135	2.0	135	82	4	327	22	21	18	37	1.95
299122--299171	25	2.0	25	100	0	100	20	32	12	36	1.89
304170--304230	29	2.1	29	90	0	95	37	22	22	16	1.93
307420--307460	21	2.0	21	100	0	82	39	19	12	29	1.88
315740--315783	22	2.0	23	82	13	56	38	20	18	22	1.93
317352--317440	28	3.2	28	88	1	126	31	24	20	23	1.98
319966--320018	2	26.0	2	81	11	63	47	1	5	45	1.37
329339--329391	2	26.0	2	81	11	63	47	1	5	45	1.37
331974--332092	27	4.4	27	81	6	134	18	18	21	42	1.90
331991--332360	27	13.7	27	82	3	395	21	16	19	42	1.89
337386--337474	28	3.2	28	80	4	92	33	23	17	24	1.96
337586--337645	26	2.3	26	82	5	68	46	13	16	23	1.82
337854--338252	27	14.8	26	78	9	229	22	17	18	42	1.89
337895--338262	27	13.7	28	83	6	417	22	16	18	42	1.89
337910--338252	81	4.3	81	89	3	462	22	17	17	41	1.90
342264--342308	23	2.0	23	86	0	63	44	13	13	28	1.81
342830--342856	14	1.9	14	100	0	54	37	14	14	33	1.88
345070--345130	17	3.9	16	72	23	51	73	1	3	21	1.06
351251--351309	23	2.4	27	81	13	74	32	20	25	22	1.98
351251--351345	26	3.8	24	77	13	77	31	18	26	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369171--369888	359	2.0	359	100	0	1436	25	18	18	38	1.93
388371--388405	7	5.0	7	93	6	54	14	0	0	85	0.59
389071--389125	27	2.0	28	82	10	69	40	12	1	45	1.53
390727--390784	20	2.8	20	82	7	64	17	27	20	34	1.95
394891--394934	22	2.0	22	82	4	54	45	18	9	27	1.79
395029--395063	18	1.9	18	94	0	61	31	11	11	45	1.76
395512--395924	206	2.0	207	99	0	819	31	13	19	35	1.90
430773--430865	27	3.5	27	88	1	134	32	19	24	23	1.98
430884--430978	24	4.0	24	76	5	84	27	7	24	41	1.81
431061--431118	27	2.1	27	84	12	75	25	25	18	29	1.98
431141--431326	32	5.8	32	82	3	223	23	19	18	38	1.93
431331--431404	22	3.3	21	71	5	58	16	22	20	40	1.91
440272--440326	28	2.0	28	92	0	92	20	23	23	32	1.98
442437--442512	23	3.3	23	84	0	107	28	25	22	23	1.99
449844--449914	23	3.1	23	82	8	90	33	23	19	22	1.97
456507--456562	27	2.1	28	83	6	71	39	19	21	19	1.93
456993--457122	33	3.9	33	77	7	147	21	24	21	32	1.98
458473--458504	16	2.0	16	100	0	64	18	0	12	68	1.20
472555--472705	27	5.6	27	83	2	144	41	18	19	19	1.90
472555--472665	54	2.1	54	91	0	177	43	16	18	21	1.88
472627--472723	27	3.6	27	75	17	78	39	18	23	18	1.92
472914--473020	26	4.1	27	76	7	78	17	17	23	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473124--473247	30	4.2	29	72	15	94	20	22	24	32	1.98
479564--479783	27	8.2	27	77	6	205	41	17	17	23	1.89
479564--479783	80	2.7	81	79	1	226	41	17	17	23	1.89
479564--479767	107	1.9	108	83	3	268	42	16	17	23	1.89
480173--480248	30	2.6	28	75	15	82	25	26	21	27	1.99
480181--480257	30	2.6	28	84	8	84	24	29	18	27	1.98
480186--480275	30	3.0	29	77	9	74	25	28	18	26	1.98
487109--487304	100	2.0	101	91	3	324	28	21	8	41	1.82
493668--493698	12	2.6	12	94	0	53	29	22	41	6	1.78
497436--497520	22	3.9	22	73	3	82	28	25	14	31	1.94
500192--500241	24	2.1	24	96	0	91	56	10	18	16	1.67
501753--501872	25	4.9	24	84	9	136	23	21	22	32	1.98
501741--501857	49	2.4	49	86	2	164	22	23	19	35	1.96
501753--501888	25	5.5	23	78	15	121	23	22	22	31	1.98
502980--503017	20	1.9	20	89	10	60	15	5	31	47	1.68
509222--509759	267	2.0	267	95	0	968	34	17	15	31	1.92
512069--512127	28	2.1	28	100	0	118	28	15	10	45	1.78
516342--516419	40	2.0	40	100	0	156	32	16	12	38	1.87
516620--516690	22	3.1	22	71	15	56	50	1	1	46	1.18
523792--523826	17	2.1	17	94	0	61	28	5	34	31	1.81
525806--525887	3	27.3	3	85	9	114	64	0	4	30	1.14
525806--525959	24	6.2	24	76	11	96	59	3	5	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526640--526686	11	4.3	11	84	7	60	78	2	2	17	0.94
526640--526686	17	2.8	17	78	15	53	78	2	2	17	0.94
527003--527059	27	2.1	28	83	9	73	8	3	35	52	1.50
527478--527770	46	6.4	46	88	0	379	27	31	15	25	1.96
527483--527770	92	3.1	92	88	1	443	27	31	15	25	1.96
527484--527770	138	2.1	138	89	0	430	27	31	16	25	1.96
527810--527866	27	2.1	29	83	9	75	52	35	3	8	1.50
528183--528226	23	1.9	23	86	9	63	15	2	2	79	0.93
528200--528231	11	2.9	11	95	0	55	12	0	3	84	0.74
528182--528231	6	8.7	6	75	16	52	16	2	2	80	0.91
528940--529038	3	33.3	3	73	13	62	31	5	4	59	1.37
529529--529571	3	14.3	3	100	0	86	32	0	0	67	0.91
532205--532247	19	2.3	18	84	15	52	20	25	13	39	1.90
534279--534331	16	3.2	16	91	5	79	79	9	0	11	0.94
534277--534331	25	2.1	25	90	6	83	80	9	0	10	0.92
534277--534331	9	6.3	9	89	8	87	80	9	0	10	0.92
535146--535194	10	5.6	9	83	16	59	77	0	12	10	0.99
535145--535194	17	2.8	18	77	22	61	78	0	12	10	0.98
535147--535185	8	4.8	8	87	12	53	76	0	12	10	1.01
536389--546447	88	114.9	88	88	2	11452	26	23	24	24	1.99
536389--546686	176	58.9	176	90	1	12885	26	23	24	24	1.99
539696--539844	74	2.0	74	92	0	244	25	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541855--541993	44	3.2	44	68	11	122	23	23	26	26	2.00
542031--542345	44	7.2	44	65	17	161	25	24	24	25	2.00
542195--542335	43	3.2	42	69	19	126	26	22	26	24	2.00
542339--543445	44	25.2	43	62	12	318	27	23	24	24	2.00
546367--546520	73	2.1	73	92	4	258	25	27	23	22	2.00
546492--546625	43	3.1	43	64	19	105	27	23	24	23	2.00
546287--546599	161	1.9	161	89	2	486	28	26	23	22	1.99
546440--546686	88	2.8	88	91	0	395	27	24	23	23	2.00
546191--546686	249	2.0	249	93	0	839	27	25	23	23	2.00
546460--546686	44	5.2	44	64	13	126	26	25	23	24	2.00

Tables:   1   2

The End!